UFO08622.5prime Sequence
1133 bp (994 high quality bases) assembled on 2011-08-05
> UFO08622.5prime
CAGTCGACATGCACAAGACCTGGAATAAGGCGTTCCACAAGCGCAAGCTG
TGGAGGAGCGTGTCCAAGCCCGGAAAGTTGGTGTACTACATGCAGCCGCT
AATCGAGCACTTGTTCGACACCTGGATGCAACCACTGCCCTTTCCGACGC
TCCTCAAGTTCATCTACAGCTGGGTGCTGATCTTCTTCATCATGATTCCG
ATGCTCTATCCGCTGCTCGTCCTCCTCTCCTACTACGGCATATTCCAGTA
CGCGGCGGAGGAGCACTTCGGACTGAAGACGCCCGAGAAGTGGGACCTCC
TGGGCGCCGCCGCCAGGCTGTGGCACTTCGAGGTGACCAACAGGAAGTAT
CTCCTTCGACTATATGCGCATGGCTCTGTGGTTCGTCTTCAACTGAACCA
ACAGCCGGAGTCCTTCGATCCCTACTTGCGAATCCCGTTTGCGGGGGAGT
TGGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAATCAAAACTGGTGAAACTCACC
CAGGATTGGCTGAGACGAAAACATATTCTCAATAAACCCTTTAGGGAATA
GCCAGTTTTCACCGTAACACGCCACATTCTGCGATTATTGTGTAAGAACT
GCGAATCGTCTGGTATTCACTCAGAGCGATGAAAACGTTTCAAGTTTGCC
TCATGAAACGGTTACAGGTGACACTATCCCTATCACGGCTCACCGTCTTT
CATTGCCTATCGATCGATTGACATCCAACGCGG
UFO08622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11145-RA | 574 | CG11145-RA | 41..487 | 9..455 | 2205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7428151..7428456 | 355..50 | 1500 | 99.3 | Minus |
| 2R | 25286936 | 2R | 7427992..7428091 | 455..356 | 500 | 100 | Minus |
| 2R | 25286936 | 2R | 7428512..7428553 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:33:24 has no hits.
UFO08622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:11 Download gff for
UFO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11145-RA | 34..487 | 2..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:10:20 Download gff for
UFO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11145-RA | 34..487 | 2..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:41 Download gff for
UFO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11145-RA | 34..487 | 2..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:41 Download gff for
UFO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7428512..7428558 | 2..50 | 91 | | Minus |
| 2R | 7427992..7428091 | 356..455 | 100 | <- | Minus |
| 2R | 7428151..7428455 | 51..355 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:10:20 Download gff for
UFO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3315656..3315960 | 51..355 | 99 | <- | Minus |
| arm_2R | 3315497..3315596 | 356..455 | 100 | <- | Minus |
| arm_2R | 3316017..3316063 | 2..50 | 91 | | Minus |
