UFO08623.5prime Sequence
1140 bp (1031 high quality bases) assembled on 2011-08-05
> UFO08623.5prime
CAGTCGACATGAATCAATTCGGCCAGCCAAAGCAAACGCAGCAACAGGAT
TACGAACTACCCAATCCGCCAAATGACACCATATCAGCGCTGGAGTTTTC
ACCGCGATCGAGTTCCTGGAACGCAATCTGTGCCGGAAGTTGGGATAACA
CCGTGCGCATTTGGGAGGTGCAAGCGGACAGGCTGGTGCCCAAGGTCATG
AATTCGCTGGAGGGCACGCCATTCGATGTCACTTGGAACGACTCAGGCAA
CAAGGTATACCTGAGCGACTCCAGCGGCCAGGTGACTGAGTGGGACTTAG
AATCGAACCAGCTGAGAAAGGTGGGACTTCACGCAAGAGCTGCACGCACC
TGCCATTGGGTGGGCCCCTATTTGGCCACAACCTCATGGGACAAGTCCAT
TAGGTTCTGGGACCCGCGTGCTGCCATAGAACTCACCAGGATGGAGCTAC
CGGATCGTAGCTATGCCGCCGATGTGCTCAACGACGTGGCGGTGGTGGCC
TGCGGCGATCGGTCCATCCTGGCCTACACTCTGCGTGGCGGACCCGTGGA
GCAGGGGCGCATGAAGAGTCCGGGCGAGAGCAACACCCAAGTGCGATCGG
TGGCGCTCCACCAGAATAGAGATCTGACCAGCTGGCTTATTGCCAAGACG
AATGGCATGGTGTTCGATCAGAGCATGGCTCATCGTACGGTCAGTTTTCC
AATCAGGTGCCATCGACGGGAGAATTCCGGCATCCTAGACGTCTATGCGG
TGAACGAAGTGAAGGTCAACATGGTGACGCAGCACATTGCCACGGTGGGA
TCGGATGGAGTGTTCTGCTTCTGGGACAGCCAGATGCGTTCCAAGCTGCT
GGAAAAGCAAGGTTCATCCTCAGCCGATCACTAAGTGCGCCATCAGTGGC
GATGGCAAGCTCTTTGCGTATGCTCTGGGCTACGATTGGTCCAGGACACG
AGTACTCGGATTCCAGCATAAAAACCCCACATATTCTGCGCCGTTTGAAA
CGATGTTGCTGCCGCAGCTTTCTAGACCATTCGTTGGCGCGCGGCCAGGT
AATTGTTCATATCATATCAATCATACCTAATCCAACCTAGCTAGGATCCT
GTCATGACATGCTGGATTCCACATAAGCCTGGTGCGTCCA
UFO08623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12782-RA | 1219 | CG12782-RA | 148..1156 | 8..1013 | 4890 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23264362..23264944 | 986..404 | 2760 | 99.3 | Minus |
| 2R | 25286936 | 2R | 23265000..23265396 | 404..8 | 1985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:33:27 has no hits.
UFO08623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:12 Download gff for
UFO08623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12782-RA | 135..1147 | 1..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:10:51 Download gff for
UFO08623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12782-RA | 144..1156 | 1..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:42 Download gff for
UFO08623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12782-RA | 144..1156 | 1..1013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:42 Download gff for
UFO08623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23264332..23264943 | 405..1013 | 98 | <- | Minus |
| 2R | 23265000..23265400 | 1..404 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:10:51 Download gff for
UFO08623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19151855..19152466 | 405..1013 | 98 | <- | Minus |
| arm_2R | 19152523..19152923 | 1..404 | 99 | | Minus |
