UFO08624.5prime Sequence
1108 bp (994 high quality bases) assembled on 2011-08-05
> UFO08624.5prime
CAGTCGACATGTCCGCTCCGGAGAACAGTTGTAGGCGGTGGATAAAAAAA
AATTGGGTTGACGGTCCATGCAAGAAGTGCTTCGAATCCACCTGCGGACC
ATGCATCGATTACAGGGTATCACCGCCTGCAGCAGACTTGCCTGAGCCCC
AGGCGGAGGTTGTTAAGGCGGTCATTGAACCGGATGGACCTGTGCGTCAG
GAGATCAACATCCGGGCGGAGTGCAGCAAGGGACGTCCGCTTCTGGAATC
CGACAAGGACAAACTGCGATGCTGTACCATGTGCGTGGCTCAGGAGCAGA
ATCTGCACCCTAATCTCTGCTCGGCGCAATGCCGGCCACTCAAAACCTAT
TTGCATTTGAATGAGTGGACAAAGCGACCCCTTCCCAAGCCCACATACAA
ACATTCTGTTATCCTGGACAATAACACCATAGTAGGTCGGTGCTTCCCGA
TGAAATTCCAGCTGAGACGCACAAAAAAGAATTGCCTGGACTGCGGAAAT
GAACTTTACTACCGGTATCCCATCACAAATAACAGCGATCTGCTGCTGAT
CAAGAACTGCTGCGAAGTGGAGGTCTATCCCGCCAAGAAAGTGGAAAATA
TGAACAACGTGAGGGTGACCAAGATATCGGGAGTCAAGAAGTTCGCCAAC
AGTCTGCTGAAGGAGCACTCCGAGTGCCGGCTGTTCACCTTGGCCAGCCA
ACTTGCGAAGCAGAAACCACCTTTGGCGCCTGATGTTAGGATGAGTCGGA
TGAGCAGGAAGAGCCGGAAGAGCCGAAAGAGCCGGAAGAGCAGCAGAAAG
AGTTCACTGTTCGGCAATAAAAAGGGTAAAAAAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
ATTCTCCCCAATAAAAAACGCCCGGCGGCACGAGCGTCTGAACAATCCAG
ATGGAGTCTGAGTCATTACTGATCTATCACAGGAGTCAAGCGAGCTCGAT
ATCAGTTACGCCCGGCTGCCACTCATCGCCGAGTACCTGTTGAATCCATA
GGCCATCT
UFO08624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30278-RC | 1164 | CG30278-RC | 104..928 | 9..833 | 3945 | 98.5 | Plus |
| CG30278-RB | 1004 | CG30278-RB | 64..888 | 9..833 | 3945 | 98.5 | Plus |
| CG30278-RA | 932 | CG30278-RA | 104..928 | 9..833 | 3945 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22217521..22217990 | 833..364 | 2260 | 98.7 | Minus |
| 2R | 25286936 | 2R | 22218041..22218397 | 365..9 | 1695 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:33:30 has no hits.
UFO08624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:13 Download gff for
UFO08624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30278-RA | 94..930 | 1..838 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:11:21 Download gff for
UFO08624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30278-RA | 94..930 | 1..838 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:43 Download gff for
UFO08624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30278-RA | 96..932 | 1..838 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:43 Download gff for
UFO08624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22217518..22217988 | 366..837 | 98 | <- | Minus |
| 2R | 22218041..22218404 | 1..365 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:11:21 Download gff for
UFO08624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18105023..18105493 | 366..837 | 98 | <- | Minus |
| arm_2R | 18105546..18105909 | 1..365 | 97 | | Minus |
