UFO08629.5prime Sequence
1129 bp (1046 high quality bases) assembled on 2011-08-05
> UFO08629.5prime
CAGTCGACATGTACTATGACATGGTGATCGAGTTCATGTGGTCCAATTCG
TTTCTGAAAAGTCTTGTCTATGAGAGTCTGGGACTATTCGATTTGCCGGA
CATGAAACAGACTTATTCTTGGTATGTGCGACACATCCTGCGAAACGAGT
GCTCCGTGATGATGATTAGCGAAGATGAAACGCAAATAAGGGCAGTGGGA
TTGCTGGAATGGATGACCGAGGAATGGCACTCCTGGGTCTTCTTTCCCTC
TTCGTTGCCCAGGAATCTGTTCCAGCAGATCATAATGATGAAGAAGGAGC
TCATCGATGCGACCAAAGCGAACATGGGCATCTCCACCTACGATGCACTG
TTCGTCCACGAGATCGCCTTTCCGGATGAGCTCTACTTTAACCGGGATTT
CCTGTCGACCATCTTCGATGTCTTTGGTTTTGTGGCCCAGCACATGCACA
TGCCGCGGGTCAGCTTCATCGCCCTCAGCTCCGTGGACCAGGAGGCCGCC
AGTCTGATCGATTACGAAGAGATCGGGCGGACTATCTACTCGATCTACAA
GGTTGGCAACACCCGGCCCTTTGACATCCTTCGCGAGCTAGACGAGATGT
ACGCACTGCTGTTTGAACTGGCCGTCTCGCCGGTACTGAAGTACATTGAA
ATGCCCGGTTTCGAGGAGTTCCACGAGGCCCTGGATGCCAGGTTGGCCAA
GGAGGCAGCCGAAAAGCGCCACGACGACGATATAGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGGGGAGCTCGATATCAAATTACGGCCCGCCCTGCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCGACAGGGAAGCATCACAAACGGCAT
AGATGACCTGATCGCCAGCGGCATCAGCAACTTGGTGCGCCTTGGCGTAT
AATAATTGGCCATGGGTGAAGCGGGGGCA
UFO08629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17375-RD | 1280 | CG17375-RD | 197..922 | 8..733 | 3615 | 99.9 | Plus |
| CG17375-RC | 985 | CG17375-RC | 197..922 | 8..733 | 3615 | 99.9 | Plus |
| CG17375-RB | 981 | CG17375-RB | 196..918 | 11..733 | 3600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6804682..6805180 | 733..235 | 2480 | 99.8 | Minus |
| 2L | 23513712 | 2L | 6805245..6805360 | 236..121 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 6805429..6805542 | 124..11 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:33:41 has no hits.
UFO08629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:15 Download gff for
UFO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17375-RB | 187..918 | 1..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:12:50 Download gff for
UFO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17375-RC | 192..922 | 1..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:47 Download gff for
UFO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17375-RC | 192..922 | 1..733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:47 Download gff for
UFO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6804682..6805179 | 236..733 | 99 | <- | Minus |
| 2L | 6805246..6805359 | 122..235 | 100 | <- | Minus |
| 2L | 6805432..6805542 | 11..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:12:50 Download gff for
UFO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6804682..6805179 | 236..733 | 99 | <- | Minus |
| arm_2L | 6805246..6805359 | 122..235 | 100 | <- | Minus |
| arm_2L | 6805432..6805542 | 11..121 | 100 | | Minus |
