UFO08633.5prime Sequence
862 bp (861 high quality bases) assembled on 2011-08-05
> UFO08633.5prime
CAGTCGACATGGAACTGGAACGCGAACTGCCCACCGACGACGCCTCCGTG
GAGTTGGATGTGTCCGAACCATGGGGTGATGTGAGATCGTCAGATAGCCA
GCTTACCCTGAAGCAGAGTGAGAGCCAGGAGACGATAAGACCATTTGGGT
ATGAGTTAGCTGATCCATCCGAGCTTAGCTCCTACGACATTCACCTGGGT
CTTCTAGTAGAGAAGGGTTTAATTGACATTAACTCATTGGACAAGCCCTC
GAACGAGGACCTTACAGACTATCCGGACTATCCGGGTCTTTTGTCCAGGT
CGGCGGATCGTAGTGGAATTGCTGAGATAGTCAAAGAAATGCGAAACGAA
TTCATGGACAAGCTGACCTCTAAGGCTAAGAGCTTCAAAGAAATCCTGAT
TAAGAAAGGCTTAATGGAGCCAAAGGACGAAAATCCTGCTATGCAGAAGA
ATGACTCTGAGAATAAAGCAAAGACCAAAGACGATTCTCAGATTCCAGAT
CGTAAGAACAAAGCGGGAAAACCTCTAGGAGAAGGCGACGTCAGACGAAA
TGGTGAACTCGCCCTGCTCATCAATGAAATCAATCATTTTACTTCTGGCA
TGGAGCAAGATCCGGACACTGCGGACTGGGCTCGGTTCCGGGCCAACCTG
CTGAAATACATAAGTACTATGTGAGCGTCATGAGCCGGAGGAAAGGCCAA
GAACGACCAACAGCCAATCGGCGCTGTCAGCGTTTTAGACCATCAGACAT
CAGCGGACCGAAGGAAGACCTCAGCAGTCGGGCCCAGTACCTCCGTATAA
ATCTCCGGGGTCTCGAATGCAAAATGCCTACCCTGACCACTTCGGTTGAT
TCTTTAGCGACA
UFO08633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32459-RA | 1376 | CG32459-RA | 65..926 | 9..862 | 4005 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22855061..22855500 | 835..403 | 1825 | 97.5 | Minus |
| 3L | 28110227 | 3L | 22855792..22855995 | 212..9 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 22855547..22855740 | 404..211 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:33:56 has no hits.
UFO08633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:18 Download gff for
UFO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32459-RA | 58..925 | 1..861 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:14:53 Download gff for
UFO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32459-RA | 58..925 | 1..861 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:52 Download gff for
UFO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32459-RA | 58..925 | 1..861 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:52 Download gff for
UFO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22855034..22855498 | 405..861 | 96 | <- | Minus |
| 3L | 22855547..22855738 | 213..404 | 100 | <- | Minus |
| 3L | 22855792..22856002 | 1..212 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:14:53 Download gff for
UFO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22848134..22848598 | 405..861 | 96 | <- | Minus |
| arm_3L | 22848647..22848838 | 213..404 | 100 | <- | Minus |
| arm_3L | 22848892..22849102 | 1..212 | 98 | | Minus |
