UFO08635.5prime Sequence
1117 bp (1009 high quality bases) assembled on 2011-08-05
> UFO08635.5prime
CAGTCGACATGGCGGACACCAAGGAGACGGTTGTGGAGGGCGTGGAGGCG
TTGACACTAAATGGAAAACCGGACGCAGAACCCGTGGAAACGGGCACGGA
TGCCCAGGCACAGGAGGGAGCCACTGCACCCACTGAAGATGTTGTGGATC
CATGGAATGTGGCCAGTAGTAATGACGCGGGCGTCGACTATGATAAGCTG
ATAAAACGGTTTGGCTCCAGCAAAATCGATGAGGAGCTTATCGCGCGTTT
CGAGAAAATCACGGGAAAGCCCGCCCACCACTTCATCCGAAGGGGCATGT
TCTTCTCGCACCGGGATCTTCATACGATTCTAACACTGCGCGAACAGGGC
AAACCCTTCTATTTGTACACTGGTCGCGGTCCCAGTTCCGGATCCCTGCA
CGTGGGCCACCTGGTGCCCTTCATCATGACCAAGTGGCTGCAGGAGACCT
TTGATGTGCCGCTGGTTATTCAATTGACCGACGACGAGAAGACCTTGTGG
AAGGATCTGAAAGTGGAGGATGCCATCAAGCTTGGACGTGAAAACGCCAA
GGATATTGTGGCCATTGGATTCGATGTCAACAAGACGTTCATTTTTAATA
ACCTGGAATTCGTGGGAAAATGTCCTGCCATGTATCAGAACATCATTCGC
ATCCAGAAGTGCGTTACCTTCAATCAGGTCAAGGGCATCTTTGGCTTCGG
GGACTCAGACATCATTGGCAAGATTGGTTTCCCAGCCGCTCAAGCAGCTC
CCGCGATTTCCAGCACCTTCCCCTTCATCTTCGGCAACAGGAAAGGTGCA
CTGCCTCATCCCGTGCGCCATCGATCAGACCCATATTTCCGCATGACTCG
CGATGTGGCTCCACGTCTTGTTTTCCCAAATGCGCGCTCATCCATTCGAC
CTTCTTCCCGGCGCTGCAGGTGCCAAGACGAAGATGTCGCTAGCGACCAG
AACTCGGCTGTTTATCTGACGGACACGCCCAAGCAGATTAAGAACAAGAT
CAACAAGTACGCTTCTCGAAGAACGCGTATCTGTGGAAGGAGCACCCCCA
AGCTGGGCGGATCCGAAGTTGATGTCTTCCTAATCAACCTGTTGAAGTTC
TTCTTGAAAGACAATGC
UFO08635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-trp-RB | 1683 | CG9735-RB | 114..1225 | 9..1117 | 5105 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9266118..9266529 | 616..205 | 2060 | 100 | Minus |
| 3R | 32079331 | 3R | 9265612..9266060 | 1061..616 | 1765 | 97.3 | Minus |
| 3R | 32079331 | 3R | 9266596..9266791 | 204..9 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:34:03 has no hits.
UFO08635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:20 Download gff for
UFO08635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 150..1269 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:15:54 Download gff for
UFO08635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 106..1225 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:55 Download gff for
UFO08635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 106..1225 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:55 Download gff for
UFO08635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9265556..9266059 | 617..1117 | 95 | <- | Minus |
| 3R | 9266118..9266529 | 205..616 | 100 | <- | Minus |
| 3R | 9266596..9266795 | 1..204 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:15:54 Download gff for
UFO08635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5091278..5091781 | 617..1117 | 95 | <- | Minus |
| arm_3R | 5091840..5092251 | 205..616 | 100 | <- | Minus |
| arm_3R | 5092318..5092517 | 1..204 | 98 | | Minus |
