UFO08639.5prime Sequence
1129 bp (1039 high quality bases) assembled on 2011-08-05
> UFO08639.5prime
CAGTCGACATGGAAAACCCAATAAACTTCAAGGATATACCCTCCGAGATG
CCGCAGCCAAAGCGCATTCAACTTGAGGGCGAGACTTCGGTGGCCGAAGC
CATAAACTTCCTGAAGACGCAATGCGATACGCGCAAGGAGCACAAGCCTG
AGGAGTTTCAGCAGGATGGACCAACCGTAGCGGACGAGTTAAACGCTCGC
CTGGCCATGGTTCATGTGCGCGAGACTCGTGCCAAACGCATTCGCCGCTT
AGTTAAGTTTTCCCCCAATGAGACGCAAGCATTGTACAGGTTCATCTGTG
TCTGTCCCCGCTACCATCCTTGCTATGTGCCCTGCCAACACACGGGACAA
ATAATCATCGACCGGGACGTGTTGTCCCGCGAGGAACACATATGTTTTCT
AGCTACACCCAAGAAGGACTTCTCCTCACCCCAGTTGGCCAAACAGGCGC
GCTACTACACCAAAAAGATCTACGTTAACCAATGTACAGCACGGGTTGAA
CGACTTGCCGATCCTCACCCAATGCGAGTGAGTGACACATACAATTTCTT
TAAGGACTACCTCTCGCCTCGTCATATAGCGGCTCTAGAGAACCAGATGA
AACCCAAACCTCCGGTAGAAGCCATGTCAATGGAGAAGGCGCTGGAATAC
ATGGAGGAGGAGATGCGTCAGCGCAAGGCAGCGAAGCGTGTCCAAAAGCG
ACGATGCAAGGGTCTAAAAAAACGAATCATTTTGCGCCAGCGCAAGCAGA
TGCAAAAGATAATTTGCGTACTGTTCGAGGAAATGAAGGACTTTCTACTC
AACGATCAGTTTATTGTTGACGAGAACTCCCCTCTATGTTGCGTAATTCT
TGAGAGACTTCGAGAATTTACAGATCAAGAATTCTATACGACAAGTAATT
TGCAAGAGTATCAGAGGATATTGGTCCAACAACCTAACCGTTTGGGTCAA
CAGTTCATATCAAACTTAAACATTTACTTGACACTCAGCAATACCTGTAA
ACGAACGATGATGGCAGAGAACGATCCGACAGTTTGTGCCTTGTAAGATT
TCATTCTGTATCCGATGAGCCGATGCCGAGATGATGACGAATGTCAACAC
GGATCCGCTGAATGACACATTGGAATTGG
UFO08639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd7-RB | 1466 | CG14098-RB | 80..1197 | 8..1113 | 5115 | 97.9 | Plus |
| Rcd7-RA | 1827 | CG14098-RA | 441..1558 | 8..1113 | 5115 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19546131..19546716 | 288..873 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 19545683..19545966 | 8..291 | 1420 | 100 | Plus |
| 3L | 28110227 | 3L | 19546771..19546975 | 872..1069 | 555 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:34:15 has no hits.
UFO08639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:22 Download gff for
UFO08639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RB | 80..1162 | 8..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:17:22 Download gff for
UFO08639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 437..1523 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:00 Download gff for
UFO08639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 437..1523 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:00 Download gff for
UFO08639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19545683..19545964 | 8..289 | 100 | -> | Plus |
| 3L | 19546133..19546716 | 290..873 | 100 | -> | Plus |
| 3L | 19546773..19546989 | 874..1084 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:17:22 Download gff for
UFO08639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19538783..19539064 | 8..289 | 100 | -> | Plus |
| arm_3L | 19539233..19539816 | 290..873 | 100 | -> | Plus |
| arm_3L | 19539873..19540089 | 874..1084 | 92 | | Plus |
