UFO08642.5prime Sequence
1103 bp (964 high quality bases) assembled on 2011-08-05
> UFO08642.5prime
CAGTCGACATGTTCCTGGACGACTTTGGAAATCCAAAGGAGGTGACTCCC
GAAACCCTGAGCACTTACACATACGATCTGCATGGCACCAAGCTGCTGAC
ATCGGCGGACACCGAGATTTACCTGCCGCCGATGTGGCATGGCACGATTT
ACAGCACTGAAAAGCTGCTGGACACCTACAAGAGGCGGTTCAATCCGGAT
CCAACTCTGCTGACCTTCCACGCCATGCAGCCGTACGAACCCGAGTTCAT
TTGCGTCCAACGGACTGTGATCGAGCTAACGCTCCTTCCGGCTGGTCAGA
GCCTCTACAGCGACAAGGACATCGTCGTGTTCCTGATCAAGCAGCCCGCC
GAGATGAAAAACTCGCTGGTCACAAAGGAACTGAGCACGCTGCTGGACTT
CTTTCCGCACAACCACCACTACCACTTGATAATCATGAACGAGGGCATCG
ATGTAGTCTACGTGGACGACAAGATCTACAACAATATATCGCCCACCAGT
CACCAGTTCCACCGCCTGTACAATTTGCTTCGAAATATCCAGCCGGACGA
CGTGCAGAGCCTCTCGGGTTCTCCATTGCCCGATGTGCTGCGCAGTGCCT
GCAGGAAGGCAGCCCACAAGACCAAGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCGACATGAAGCCATCACAAACGGCATGATGACTGA
TCGCAGCGCATCAGCACTTGTCGCTGCGTATAATATTTGCCATGTGAAAC
GGGGCGAGAGTGTCATATGCCACGGTTAATCAACTGGTGAACTCACCAGA
TGCTGAAACGAAAACCATTTTCAATAACGTTAGGGAAATGCAGTACGTAA
CGC
UFO08642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14346-RD | 755 | CG14346-RD | 48..666 | 8..626 | 3080 | 99.8 | Plus |
| CG14346-RC | 953 | CG14346-RC | 246..864 | 8..626 | 3080 | 99.8 | Plus |
| CG14346-RA | 860 | CG14346-RA | 153..771 | 8..626 | 3080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1368530..1368961 | 195..626 | 2145 | 99.8 | Plus |
| 2L | 23513712 | 2L | 1368365..1368479 | 80..194 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 1368241..1368313 | 8..80 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:34:28 has no hits.
UFO08642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:25 Download gff for
UFO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14346-RA | 140..758 | 8..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:18:51 Download gff for
UFO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14346-RA | 153..771 | 8..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:06 Download gff for
UFO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14346-RA | 153..771 | 8..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:06 Download gff for
UFO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1368530..1368961 | 195..626 | 99 | == | Plus |
| 2L | 1368241..1368313 | 8..80 | 100 | -> | Plus |
| 2L | 1368366..1368479 | 81..194 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:18:51 Download gff for
UFO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1368241..1368313 | 8..80 | 100 | -> | Plus |
| arm_2L | 1368366..1368479 | 81..194 | 100 | -> | Plus |
| arm_2L | 1368530..1368961 | 195..626 | 99 | == | Plus |
