UFO08643.5prime Sequence
1129 bp (1013 high quality bases) assembled on 2011-08-05
> UFO08643.5prime
CAGTCGACATGTCTACGTCTACGGCGGCCGCCAATTTGCTAAAAACAGTG
GAGGAAACCTTTTCCGGTTACAATAGCGGCGATGAGCATCATCAGCCCAA
AGAGCGATTGATTCCAGTGGAAGAGTGGCAGCGACGTGATCTGGAGTTCG
CCAAATGTATGGAACAGCGCGGCTACGAACTTAAGCCTGTCGAGGAGGAT
GGCGCCTGCCTGTTTCGCTCTATATCCCTTCAAATATACGGCGACGAGGA
GATGCACGACGTGATCCGCCAACACACTATGGATTATATACACGAGAATC
GGGAATATTTCGGTCAGTTTGTCACCGAGGACATCAACAGCTATATACAG
CGTAAACGGGCTCGTGATGCTCATGGCAACCACATTGAGATCCAAGCTAT
TTCCGAGATCTACAGCCGTACCGTCGAGGTATACTGCTACCAGTCAAATC
CCATCAATATATTTAACTCGGAACAGTCGCAGGCGGGTTATCCCCCGCTG
CGTTTATCCTATCAGCGCGGATCACACTACAATGCTATTCTGGATCCCTA
CAACGCCACCGTTGGCGTGGGCCTGGGCTTGGCTGGATACAAGCCCGAGA
TCCAAACCAAAGAGGCTGTGCGTCTCAGCGAGCAGTTGGAGATCGAACAG
ACCATGTTTGAAGATAAACTAAAGACAACAGACTGGGAGGCCACTAACGA
AGCCATTGAGGAGCAAATTGCTCGCGAGTCTTACCTACAGTGGTGTCGCG
AGAATACGCAACGCTCGCGCAACAGCAATACAGCGGCAGGATCGGCCACA
TCCTCGACGGTTACCTCTGCAGAAGCGCTTACCGACTCCGATGCCTCGCC
CTCAAAATACTCTGCGTGTGGGGGCACTGGCAGCAGCGGTAATCCACCTG
TGGCTTTGACCAGCGGTAGTGGTGTGATGCGCCGACCCGCGTTTTCGCTG
TCGCCCAAAACACTTAACCAGTTTAGTCCACAGCTACCGCAGAGTACCGA
GCTGGGTGCTACGATAGCGATGCAACAGACATGAGTAGCACCAGCTCGGG
GACCAAGCGGGTGGCAGTCATCGCCGAGCCAGCTGCCAGCAACGGTCGCA
AAGAATCCAGTTCACGGTCGCTTACGCCC
UFO08643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-RF | 3179 | CG6091-RF | 1012..2112 | 9..1098 | 5070 | 98.1 | Plus |
| CG6091-RE | 3276 | CG6091-RE | 1109..2209 | 9..1098 | 5070 | 98.1 | Plus |
| CG6091-RD | 2167 | CG6091-RD | 353..1453 | 9..1098 | 5070 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11606678..11607085 | 1049..649 | 1655 | 96.6 | Minus |
| 3L | 28110227 | 3L | 11607652..11607933 | 290..9 | 1410 | 100 | Minus |
| 3L | 28110227 | 3L | 11607144..11607346 | 650..448 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 11607435..11607591 | 447..291 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:34:32 has no hits.
UFO08643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:25 Download gff for
UFO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RE | 1075..2184 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:19:19 Download gff for
UFO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RD | 344..1453 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:08 Download gff for
UFO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RD | 344..1453 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:08 Download gff for
UFO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11606625..11607083 | 651..1098 | 95 | <- | Minus |
| 3L | 11607144..11607346 | 448..650 | 100 | <- | Minus |
| 3L | 11607435..11607591 | 291..447 | 100 | <- | Minus |
| 3L | 11607652..11607942 | 1..290 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:19:19 Download gff for
UFO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11599725..11600183 | 651..1098 | 95 | <- | Minus |
| arm_3L | 11600244..11600446 | 448..650 | 100 | <- | Minus |
| arm_3L | 11600535..11600691 | 291..447 | 100 | <- | Minus |
| arm_3L | 11600752..11601042 | 1..290 | 98 | | Minus |
