UFO08648.5prime Sequence
1108 bp (1009 high quality bases) assembled on 2011-08-05
> UFO08648.5prime
CAGTCGACATGACCAACGCAACGGACATCGGTGCTAACGACGTGGAGATG
GAGGTGGATCCAACGGCGGAGACGCTGGCTGACGAGAAGAAGAACCAAGA
TGTGGCCGCCGTGCAGGAGATCCGCGAGCAGATTCGTCAGATTGAGAAGG
GGGTAGCCTCGAAAGAGTCGCGCTTCATCCTGCGCGTCCTTCGCAATTTG
CCCAACACTCGTCGCAAGCTGAACGGCGTCGTCTTCCGGAATCTTGCACA
GAGTATTTACCCCGCTGGTGCAGATCGTGAGGCGGCCGTGGCTTTGATGC
CCGCTGTGGAGAAAGACGCCACCGAGCTGCCCGATGTTCCCAAAAAACAA
GTTGCCACCAAGGCTCCAATCGCCGAGGTCGATGCCTACTTCTACCTGCT
CCTGCTGGTCAAGCTCATCGACGCCAGTGATTTAAAGCGGGCCGGAATTA
GCGCCGACGCCCTAATGGCCAAAATCTCCATCCAAAACCGACGCACCCTT
GATCTGATTGGTGCCAAGTCCTACTTCTATTTTTCAAGAGTGGCGGAGCT
AAAAAACTCACTGGAAGGCATCCGATCCTTCCTGCACGCTCGTCTGCGCA
CCGCTACGCTGCGTAATGATTTTGAAGGCCAGGCGGTGCTTATTAACTGT
TTGCTCCGCAACTACTTGCACTATGCTTTGTACGACCAAGCCGACAAGCT
GGTAAAGAAATCCGTCTACCCGGAATCGGCCAGCAACAATGAATGGGCGC
GTTTCCTGTACTATCTAGGTCGGATTAAGGCCGCTAAGCTGGAGTACAGC
GATGCCCACAAGCATCTGGTCCAGGCCCTGCGTAAGTCGCCGCAGCACGC
TGCCATTGGCTTTCGTCAGACGGTTCAAAGCTAATTATCGTTGTGGAGCT
GCTTTTGGGCAACATCCCGGAGCGTGTGGTGTTCCGGCAAGCGTCTTCGC
CAATCTCTTGTGCTACTTCAGCTCCACGCAGCGTGCGTCTGGGCACTTGA
AGCGCTTCCGGACGTGGTTCCCATACGACCCAGTCAACTGAACCACCATC
ACCCTGATTATCCGGCGTGCCCATGTGATCAAGACGCATCCGGCTCCATC
GACATTCG
UFO08648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn3-RA | 1831 | CG42641-RA | 265..1378 | 9..1101 | 4880 | 97.1 | Plus |
| Rpn3-RB | 1692 | CG42641-RB | 126..1239 | 9..1101 | 4880 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19052278..19053069 | 172..960 | 3785 | 99.1 | Plus |
| 2L | 23513712 | 2L | 19052054..19052217 | 9..172 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:34:50 has no hits.
UFO08648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:28 Download gff for
UFO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn3-RA | 216..1338 | 1..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:21:21 Download gff for
UFO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn3-RB | 117..1239 | 1..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:15 Download gff for
UFO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn3-RB | 117..1239 | 1..1101 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:15 Download gff for
UFO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19052045..19052217 | 1..172 | 97 | -> | Plus |
| 2L | 19052279..19053228 | 173..1101 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:21:21 Download gff for
UFO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19052045..19052217 | 1..172 | 97 | -> | Plus |
| arm_2L | 19052279..19053228 | 173..1101 | 96 | | Plus |
