UFO08649.5prime Sequence
1110 bp (1003 high quality bases) assembled on 2011-08-05
> UFO08649.5prime
CAGTCGACATGCCGCGACACAAAACACTAGTGAGCATTGGTCATCGTATT
ATGAAGCGCTTCAAACAGTTGGATCTCAGGGTCGACAAGGAGTTCGTCAT
CTACATGGTTCATCTGCTGGCAAGAGATCGGCGCAAAGGTCTCCTGAAGT
ACGACCTCAATAAGCCAACCGCCTGTGCCATTGAGGGTTTCGTGAATACA
ATTGTGGATAGCTATGTCAATTCGAAAGATTGCACTATGGCCAACATGAA
GATGGCTTGGGTAATGAAAAAGGGAGTAACCATAGACCTTGAATACGTCA
AGAAGAAGTACGAGGAAAAGTTCCAAACCGAACTGCAGCTGCTAATCAAG
GATATCCTTCAGTATCCCGAGACTTGCAGTAAAGTGCAGTTGGACCAGCT
CTTCGCAAAGATGCAGGTCTTCATAGTTGCCTGCTACAGTCTGGGCTCGC
CCAAGAATCATGTTCTGCTTAAGCTGACTGCCCAGGCTCTCAACAGCGTC
ATCGGTCGAAGTGACCTACAGAATTATGTCCTGAAGAAGAAGTACCATCG
GCTAGAGTATCTTCAACGCTTGTCGGCGACCGTGGGCGGCATTGTGATCT
ATAACAACGATGGCCCCGATGGAGATCGGGAGAATGTTAGAAGCGTGGTC
GATGATCTGGAAATGGCCCAGAAAAACACGGAAGCCGCATTTGCAGCCAG
TATGGGAAGGGCGGTCAAGATGCAGTCCACTTGCCAGGCGGCACTGGATG
ACCTCATAAACATAGATCATAAAGGACGAGACCTTGACCTACCGCGTGCC
CCTCGAGCACCTGGATCGGCTGAACCAGTTTGCGGCGACCTACTTTATGC
TCCATCGCTGTCTGACGACTCTGAACGAACATTACCAGAAGACAGTGTAC
CTAATTGAAGTGGAGCATAGCGATATCAATGCGTGATCTGCAGATTGATG
ATACCCTATCCATGCGCACGGCTATTGATCGGAGCTTAATATTTCCGCAC
TTTGTGTACTCCTCTCAGTGTGGGGGCCAATCTGAACAACTTACTGACCA
CATTGTTGAGTTAACAAGCTGGAGGGACAGTGGAAGCCATGGTCCGCTCA
CGAACTGATG
UFO08649.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13436-RA | 1917 | CG13436-RA | 81..1150 | 9..1077 | 4920 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20636472..20637108 | 9..645 | 3125 | 99.4 | Plus |
| 2R | 25286936 | 2R | 20637164..20637499 | 645..979 | 1460 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:34:54 has no hits.
UFO08649.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:29 Download gff for
UFO08649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1162 | 9..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:21:52 Download gff for
UFO08649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1162 | 9..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:17 Download gff for
UFO08649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1162 | 9..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:17 Download gff for
UFO08649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20636472..20637108 | 9..645 | 99 | -> | Plus |
| 2R | 20637165..20637514 | 646..994 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:21:52 Download gff for
UFO08649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16523977..16524613 | 9..645 | 99 | -> | Plus |
| arm_2R | 16524670..16525019 | 646..994 | 97 | -> | Plus |
