UFO08651.5prime Sequence
1130 bp (1017 high quality bases) assembled on 2011-08-05
> UFO08651.5prime
CAGTCGACATGTCACAGCGAAATCACAGAGTGGACCGCTTCGCCCAGATG
ACAAAGCAGGAGGAGATCATAGCCAAGAAACGGCAAGAGATCCTCGAGAA
GCAGAAGACGGCACAGCTGGCGAAGGCGGTGGCCGCGGCGCAGAACTTGG
CAGCGCAGCTGAAAACCGAGACGACTGTGGGAAAACCCATTGGCAACGAG
GTGGAGTATGAGGAGGATGCCCGATACCTGGACACCGCCGTCCAGGACAC
CTCTCTAGCGGCCGGCGAGGATGGCCTGGAGGCTGTTCACATTGAGGCCA
CGGCCAGCAAGGGAAAGACGGAGGACGCGGTGGCCCCCAAGACGCTGAAT
AGCTTCACTGGCAAAACGGGCAAGATCACATTTGGCATGAAGCGTCAGCA
GCTGCCTCAGCCCAGTGTTGAGCAGCCACCACTGAAGGTTAAAAACACTT
TCTGCAACGATGGTTCCTTTTTAGAGAACTTCAAGAAAATACTCGAAAAG
CACGAAAAGCCTCCGCAGCCCTTGATTGTTCCGCCGGTTCCAGTGCCCAG
CGCCGAGGAGAACAAAGCCGTGGACACGGAAACAGCAGAGCAGAACAACA
GTCCCCAGCTAGAGGCGGCCATCGCCATAAGCTCGGCAGCAGCCATGGCT
ACCTCCATTACGGTGACCAGCTCGGCGCCAACTCATTTGGCTTTTGGACT
ACCCGTGCAAGCAGTGCAGCCACCACCGCCGCCTCCATTTGCATTCAATC
CTACGCTTTTGCAACAGGGACCACCGCAGATGCAGCTGCCAGCTGCATTC
TTTCACGGCCATTTGCCTCTGCACTTGCATCCGGCGGCAGTTGCTCCTCC
GCCACCTCCACCGCCTCCACAGCTGCCCATCGCTCTGACCAACATGGGAC
AGATTTACATGCAGCTTGGTCCGTCTCCAGTGAGGCTTTGCAGCTGATGC
CATACCGGCGCCCAAAGAGTTTGACTTAATGCCATACCTAAGCCACAAAT
AAATTCTGGAAGCTATCCAGATGCCAAGCATCGGTGGTCATTTCGAACGG
AGCAGCTTGCTCTGCGACCGCAATGTCAATGCAGTGATCCAACCAACGCC
TCCGCGCACTGTATTGGAGGAATGAGACAC
UFO08651.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31550-RD | 2700 | CG31550-RD | 97..1221 | 9..1122 | 5070 | 97.6 | Plus |
| CG31550-RC | 2573 | CG31550-RC | 97..1221 | 9..1122 | 5070 | 97.6 | Plus |
| CG31550-RB | 2691 | CG31550-RB | 97..1221 | 9..1122 | 5070 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5485639..5486180 | 9..550 | 2695 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5486233..5486728 | 549..1042 | 2225 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:36:05 has no hits.
UFO08651.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:44 Download gff for
UFO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RC | 108..1162 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:30:45 Download gff for
UFO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RB | 97..1151 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:45 Download gff for
UFO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RB | 97..1151 | 9..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:45 Download gff for
UFO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5485639..5486180 | 9..550 | 99 | -> | Plus |
| 3R | 5486235..5486747 | 551..1063 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:30:45 Download gff for
UFO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1311361..1311902 | 9..550 | 99 | -> | Plus |
| arm_3R | 1311957..1312469 | 551..1063 | 97 | | Plus |
