UFO08653.5prime Sequence
1155 bp (1032 high quality bases) assembled on 2011-08-05
> UFO08653.5prime
CAGTCGACATGAGGCAACTATTCAGACGCTTGATGAACCACCAGTATTTG
ACGCAGGACCAGATCAATGGGTTCGACAACTACAAGTACAGTGCCATTGA
TACCTCACCGCTGAGTCAGTATGTGATGCATCCCTTTTGGGATTGGCTAG
TTAAGTTCTTTCCGCGCTGGTTTGCGCCCAACCTGATGACCTTTCTGGGC
TTCCTGTTCAGCGCCATGAACCTGGTGCTGCTCTCCTACTACGACTGGAA
CTTTGATGCGAGTTCCGGCGAGGAGGGCACCACCCCCATTCCGTCGTGGG
TCTGGCTCTGCACGGCCATCAACATCTTTTTAGCCTACACCCTGGACGGG
ATCGATGGCAAGCAGGCCCGCCGCATTGGATTATCTGGTCCGCTGGGCGA
GCTCTTCGATCACGGTTTGGATTCATATACCGCCATGTTGATCCCGACGT
GCCTGTACAGCATTTTTGGACGCAGTCGCGTGTATTCGGTGCGACCCATG
AGGATGTACTACGTATGCCTAACGGTCTACTTCAACTTCTTCATTTCGCA
CTGGGAGAAGTACAACACGGGCATCCTCTATCTGCCCTGGGGCTATGACC
TCAGCATGTGGGGGAGCACCGCCATGTACCTGGTCACCTGGTGGATGGGC
TTCGAGCGCTGGAAGTTCGAACTGCCGCTGGGATCCTACGGAACCCTACC
ATTGGGCAATGTCATGGAGGCAGTGCTGCATGTCAGTGCTATGGCGAATC
TTCCACTAGTCATAATTAATGTCTACAACTCTTATGCGCATCGCACAGGT
CGTCTGTTGTCCTTTTGGGAGGCCGTTCGGCCCATGTGGCCCTTCATCAC
CTACTTCGTCATACTGCTCGCCTGGCCATATGTATCGCCGAACGACATCA
TGGAAAAGGATCCACGCGCTATTTTCATGCTTAGCGGCACAATCTTTTCA
CGTCAGCTGTCGTTTAATTGTCTCCCAGAATGTCCGTGACGAGAATGCGA
GCTGCATGGCAGACGCCTATGTTTATCTTTCCTTCTGGACGAGCCTGTGA
TTCGCTTACTGGAGAGGCGTGCTATACTGGCTTCTAAATTGGGACCACGC
TTGAACCATTGGCCAATACGGCCCAACCGTGTAACGAGTGTTGCGACATT
TCACC
UFO08653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33116-RA | 2512 | CG33116-RA | 331..1448 | 9..1121 | 5140 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19534301..19534925 | 154..778 | 3125 | 100 | Plus |
| U | 3151297 | U | 2744410..2744695 | 154..439 | 1430 | 100 | Plus |
| 2L | 23513712 | 2L | 19534979..19535149 | 779..949 | 855 | 100 | Plus |
| 2L | 23513712 | 2L | 19533809..19533886 | 9..86 | 390 | 100 | Plus |
| 2L | 23513712 | 2L | 19534148..19534218 | 85..155 | 355 | 100 | Plus |
| U | 3151297 | U | 2744257..2744327 | 85..155 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:36:14 has no hits.
UFO08653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:45 Download gff for
UFO08653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 329..1454 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:31:46 Download gff for
UFO08653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 323..1448 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:49 Download gff for
UFO08653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 323..1448 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:49 Download gff for
UFO08653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19534979..19535159 | 779..957 | 98 | -> | Plus |
| 2L | 19533801..19533886 | 1..86 | 96 | -> | Plus |
| 2L | 19534150..19534218 | 87..155 | 100 | -> | Plus |
| 2L | 19534303..19534925 | 156..778 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:31:46 Download gff for
UFO08653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19533801..19533886 | 1..86 | 96 | -> | Plus |
| arm_2L | 19534150..19534218 | 87..155 | 100 | -> | Plus |
| arm_2L | 19534303..19534925 | 156..778 | 100 | -> | Plus |
| arm_2L | 19534979..19535159 | 779..957 | 98 | -> | Plus |
