UFO08654.5prime Sequence
1131 bp (1010 high quality bases) assembled on 2011-08-05
> UFO08654.5prime
CAGTCGACATGTTGATCAACCGCGGCTCCCTACTCGAAGGTCGCGATGGT
TCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGGCACCGATCGCGT
ACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCAATGGCAGCTTCG
GCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAACTGGTGGCAATC
AAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGAATTGCAAATAAT
GCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGTACTTTTTCTATT
CGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTAGTCCTCGAATAT
ATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGCCAAAACCAAGCA
AACGATACCAATCAACTTTATTCGGCTCTACATGTATCAACTGTTCAGAA
GTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGTGATATCAAGCCG
CAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAAGCTCTGTGACTT
TGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATGTATCGTATATCT
GCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGCGCCATCAATTAT
ACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTTGGCCGAACTGCT
GCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGGATCAGCTCGTCG
AGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAGATACGCGAAATG
AATCCAAACTACACGGAATTCAAGTTCCCTCAGATTAAGAGTCATCCATG
GCAGAAAGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGT
CCCTGCTGCTCGAGTATACGCCCAGTGCCAGGATCACACGCTCAAGCCTG
CGCACATCCGTTCTTCGATGAGCTACGCATGGAGGGTAATCAACACTTGC
CCAACGGTCGCGAAATGCCGCCGCTGTTCAACTTCACAAGAAGCATGGAG
CTCTCAATACAGCCCAGCCTAATGCCGCAGGTTGTGCAAAGCATTCTTGC
AAAAGCCACTCGAACTGACGCAATTCGACTG
UFO08654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RG | 3174 | CG2621-RG | 685..1756 | 8..1080 | 5175 | 99.2 | Plus |
| sgg-RR | 5004 | CG5-RR | 1098..2139 | 38..1080 | 5025 | 99.1 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2300..3341 | 38..1080 | 5025 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2671307..2671545 | 425..663 | 1195 | 100 | Plus |
| X | 23542271 | X | 2671628..2671824 | 663..859 | 985 | 100 | Plus |
| X | 23542271 | X | 2669911..2670103 | 38..230 | 965 | 100 | Plus |
| X | 23542271 | X | 2672914..2673096 | 858..1038 | 755 | 96.7 | Plus |
| X | 23542271 | X | 2671119..2671231 | 313..425 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 492..772 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2670172..2670257 | 229..314 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:36:19 has no hits.
UFO08654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:46 Download gff for
UFO08654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 628..1723 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:32:16 Download gff for
UFO08654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 678..1773 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:50 Download gff for
UFO08654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 678..1773 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:50 Download gff for
UFO08654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2643694..2643732 | 1..39 | 95 | -> | Plus |
| X | 2669913..2670103 | 40..230 | 100 | -> | Plus |
| X | 2670174..2670257 | 231..314 | 100 | -> | Plus |
| X | 2671121..2671231 | 315..425 | 100 | -> | Plus |
| X | 2671308..2671545 | 426..663 | 100 | -> | Plus |
| X | 2671629..2671822 | 664..857 | 100 | -> | Plus |
| X | 2672914..2673107 | 858..1050 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:32:16 Download gff for
UFO08654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2537727..2537765 | 1..39 | 95 | -> | Plus |
| arm_X | 2563946..2564136 | 40..230 | 100 | -> | Plus |
| arm_X | 2564207..2564290 | 231..314 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 315..425 | 100 | -> | Plus |
| arm_X | 2565341..2565578 | 426..663 | 100 | -> | Plus |
| arm_X | 2565662..2565855 | 664..857 | 100 | -> | Plus |
| arm_X | 2566947..2567140 | 858..1050 | 95 | -> | Plus |
