UFO08656.5prime Sequence
1138 bp (1047 high quality bases) assembled on 2011-08-05
> UFO08656.5prime
CAGTCGACATGCTTAGTTCAAAAAGTGACACTTCTGGAGACGATATCTCT
ATAACTGCACAAGCAGAAAAAAGAGTGGATGATAGCATCAGAGCGCCATC
TATTGGCTGGAATGCTGAGCACAAAGATGTTCAGATTCCAAGGGACCAAC
TAACCCACAGGCAGATCAGCAAGTGCAATTTGTTTGAGGAATACATCAAG
CTCCCAAAGAGTGAATATGGACAAACAAGCCGCATGAAGCGATTCCGATC
CGAAGAGTTAGCTATTAAGCAAGAAGATCAAATCGTGGAGCATAGATCAT
CGAGTCTTTCGCGGCTATCGGATGTCACAATCAAGCCCACCTGCGAGGTG
AGTAGTCAGACTTCGTGGACAGCAGCGGACGAGAGTAATATGAATAGCAA
GGATTTGGAGGCGAAGCTGGCGGCTGTACTCGGCGGTGGTATCGATCTCG
AAACGGACAAGCCCAGCAAGATCCAGCAGCACACGATCCACATCGAGGTG
GAGTCGGTGACATCGGCCACGGCTATGCAAAGACCCCCACTGCACCAAAG
GATGTGGCAGGTCCTTGTGCAGACGGCGGATACGATTGTCGCATTCGCCT
CTATAATCGGCGAGAATTTAACAGTGGCACTCTTCATTGTCCTGTGCCTG
TGGTGCCTTTACCTCTTACTAAGCCACTTTTATGGCAACTTGCAGACCAA
TGTCGGCATGCCGTCCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGCAGCCATCAAAACGGCATGATGAACCTGAATTCGC
AGCGGCATCAGCACTTGTTGCTTGGCGTATATATTTGCCATGTTAAAACG
GGGCGAAGAGTGTCCTATTGGCAGTTAAATCGAACTGG
UFO08656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16852-RA | 835 | CG16852-RA | 48..760 | 7..719 | 3550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13541124..13541571 | 272..719 | 2225 | 99.8 | Plus |
| 2L | 23513712 | 2L | 13540798..13541064 | 7..273 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:36:27 has no hits.
UFO08656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:47 Download gff for
UFO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16852-RA | 42..765 | 1..727 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:33:18 Download gff for
UFO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16852-RA | 42..765 | 1..727 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:53 Download gff for
UFO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16852-RA | 42..765 | 1..727 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:53 Download gff for
UFO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13540792..13541064 | 1..273 | 98 | -> | Plus |
| 2L | 13541126..13541576 | 274..727 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:33:18 Download gff for
UFO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13540792..13541064 | 1..273 | 98 | -> | Plus |
| arm_2L | 13541126..13541576 | 274..727 | 98 | == | Plus |
