UFO08657.5prime Sequence
1093 bp (995 high quality bases) assembled on 2011-08-05
> UFO08657.5prime
CAGTCGACATGCTGTTCTCAAAGACGAATACCTCTTGTGCAAGTCGTATC
CAGTTTTTGGATAATGTAGAACACCGCTGCCAGTCAATGCTGAAGCTTAA
CGACCACAAGATGAACATGGAGTTGCCCAATGAAGTTCGGCCGCAGATCG
TCGGTATGGCCGGTGGGTACTCAAGAGAGAGTGGGAGTTCGGTGACAAGT
AGCAGTGGGCTGTCTAGTAAGAGAAGCTGCTTTATATCAACCTGCTATCC
TAAAGCTGAACGCAAGGCCTGTGTATCCGCTGACACATGTCATGTTAAAT
GCTGCGATGGGGAAGATAATCGTCCACCGTACGCTAGGATAATGCCCGAA
GATCGCCGATTTGGTGTAGTTATCACCAATGAGGAGTGTCCCTGCGACTG
TGACTTCAATTGCATTTTAGAGTTCATGTCAGAGGCATTCCATACTGCGC
AGGACGTCGCCTCCCTGAGCTTTAGTCAGTGTACTCCGGTAGCTGAATTC
GACTGCTCTTTGCTGCTCGTTGCCGAGGACAGTGACTCCAGTGATTGGCT
TCTCCGGGTAGCCCGACCCATGTGTCCACCATACAGATGCACGTCATTCA
TCAAACACTTTGATCTGGTGCGGTCCATATTTGTTATTCCAATGATCGTG
GAACGAAGGCTCTGCAATGTCTTTCAAATATTTGAAAACCAAAACTGCGG
CATTGACACCGGAAAATGGTGCGTGATGGAAATGGCTCCTTTGGATCCTT
GCTCAGATTCATATGCATCGAAAGTAATCTTCCCGGATTCCACCAACTAT
GAGATCGTGGCTTACATCGACAACGAATCCAAGGAATACATTGAGAATCA
CTGCAGCAGATAAAGTATATAACGTGCACCTGCCTGTGGATTTCCCCAAG
CTTGTCTTGTACAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCA
GGTAGTGTCATATCATAATCATTATCATAATCATAATCCACAACTTAGCT
TAGAAGATCCTGTTCATGACTATGGCTTGGATCTCACATAAAAACGCCCG
GCGCACCGTCGTCTGAACAAATCGATGATCTGAAGGTCTTACT
UFO08657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31948-RA | 1167 | CG31948-RA | 187..1095 | 9..913 | 4400 | 99.2 | Plus |
| CG31948-RB | 1362 | CG31948-RB | 340..1215 | 42..913 | 4235 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2415506..2416381 | 913..42 | 4155 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:36:31 has no hits.
UFO08657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:48 Download gff for
UFO08657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31948-RA | 184..1100 | 4..919 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:33:49 Download gff for
UFO08657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31948-RA | 184..1100 | 4..919 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:55 Download gff for
UFO08657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31948-RA | 184..1100 | 4..919 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:55 Download gff for
UFO08657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2415501..2416379 | 44..919 | 98 | <- | Minus |
| 2L | 2416436..2416473 | 4..43 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:33:49 Download gff for
UFO08657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2415501..2416379 | 44..919 | 98 | <- | Minus |
| arm_2L | 2416436..2416473 | 4..43 | 95 | | Minus |
