UFO08658.5prime Sequence
1113 bp (1015 high quality bases) assembled on 2011-08-05
> UFO08658.5prime
CAGTCGACATGGTAAACTTTGTGCACCCCGAGGAAATGTATCTCTTTGTG
GAGAGCATTCGTCCATTTGAGGTGCGTGAGGTGGGCAGCCCGAAGTGGCT
GGAGGTGCACGAGATGATCCTCGGGCTGAGCCAGCAGGCCGCCTTGGAGC
TGTCCCAGAATCGCGAGGAGGAGGTGAAGGAGTTCCTCATCTCGCGCGAC
AAGCTACGCGTGCTGATCCACGAAGCCTATTGCGTAACGTTGTGGAAGAC
GCGTGTTCTGCCGCATCTGCTGGAGATTGATCCCAATCCGCAGGCCACGT
TCCTTATCTACACGGTGCTATATCACGAGGCTGCTTTGGTAGCGCTTCTG
GATGTGTGTCTCTACCATCCCAGTGGCTGTGAGACGCTGCAGGAGTCTGT
GCTGGATTTGATTGACTATTGCGCCCAGGCCATTTCCCAGGTCATTGGCT
TGGTCAGCATGGGTTACCACGAGAACGAGACAAAGCTGGACGTGGATGAG
GCAGTGCTCACGGAGCTGGAGCGCCAGAAGCGCGACTTTATCTATAAGAT
TGGACTGCGCTGCATCTCAGTGCTGAACTACATAGCAGATAATGTGACAT
TGTTTCATCTAAGCGCCGCACGCCGTTTGCTGGTGACCCATGACATTCCG
TGGCTCATGGCAGATGTACTTAGCTTCCGTCCGTGGCAGAGAAAGACCAG
CAAGGGCATTCAGAAGTTCATCGACGAGAAGTGGACCAATGTGGACGACG
TCACCAAGATTGTCAAGCCAGAGGCGCACGCCTGGTTTTGTGTGCGTCAG
CTGCTCCTTAATCCTCAGATCATGGAGAACTATGCTTTCAACGAGGCACG
CTGCAAGCAGTTACACAAGCTTTTGGGTCTCATGCACGAGCCGTTGCTGG
ACCAGCTGCCGCCACTTATAGAGCTAAAGGTGTTCCTGAGCCGCTGACGC
TCAGCGGCATACGGCCAGACACAGCCGCTCTTGCTGGAGAACTTCCGCAG
ATCCAGAAGGACTGCTCAGATGTCAAGAAAATGGCGGCCTCTATCAGATT
GCCAAGAATACGAACTCGGTTTCTTAGCAGAACCATGAACCTTGGCTTGC
ACTCCCTCCAAGC
UFO08658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zmynd10-RA | 1497 | CG11253-RA | 79..1159 | 9..1079 | 4935 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13025689..13026359 | 679..9 | 3280 | 99.3 | Minus |
| 3L | 28110227 | 3L | 13025440..13025630 | 869..679 | 940 | 99.5 | Minus |
| 3L | 28110227 | 3L | 13025167..13025379 | 1072..868 | 550 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:35:53 has no hits.
UFO08658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:41 Download gff for
UFO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11253-RA | 79..1150 | 9..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:29:21 Download gff for
UFO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11253-RA | 79..1150 | 9..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:39 Download gff for
UFO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zmynd10-RA | 79..1150 | 9..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:39 Download gff for
UFO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13025440..13025629 | 680..869 | 99 | <- | Minus |
| 3L | 13025167..13025377 | 870..1072 | 91 | <- | Minus |
| 3L | 13025689..13026359 | 9..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:29:21 Download gff for
UFO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13018267..13018477 | 870..1072 | 91 | <- | Minus |
| arm_3L | 13018540..13018729 | 680..869 | 99 | <- | Minus |
| arm_3L | 13018789..13019459 | 9..679 | 99 | | Minus |
