UFO08660.5prime Sequence
1070 bp (989 high quality bases) assembled on 2011-08-05
> UFO08660.5prime
CAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGGAGGCCATC
ACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCGGAGCACTT
CCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTTCAATGTTC
AGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGTACACCTAC
ACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATCTGCGCCAT
GGGGGAGAGGTGGCACGAAGCTTGCTTTTGCTGCGGCGGTGCCTGCAAAA
AGCCGCTCGCCAGTCAAACGTTCTATGAGCGCGACGGCAAGCCCTATTGC
AAACAGGATTACGAGAACCTCTTTGCTGCCAGGTGCGCCAAGTGCGAGAA
GCCTATAACGGACTCAGCGGTGCTCGCTATGAACGTGAAGTGGCATCGCA
ATTGCTTCCAGTGCAACAAATGCGAGAATCCTATAACCTCGCAGACTTTT
ACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGCGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATATATTTGCCCATGTGAAACGGGGCGAGAGTTGTCATATGCCACG
TTAATCAAACTGTGAACTCACCAGGATGCTGAAACGAAAACATATCTCAT
AACCGTAGAATAGCAGCTTCACGTACACGCCAATCTGCCAAAATATGTGT
AGACTGCGATCGTCTGGGTA
UFO08660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31624-RC | 979 | CG31624-RC | 87..620 | 9..542 | 2640 | 99.6 | Plus |
| CG31624-RB | 830 | CG31624-RB | 80..613 | 9..542 | 2640 | 99.6 | Plus |
| CG31624-RA | 888 | CG31624-RA | 189..722 | 9..542 | 2640 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21199404..21199937 | 542..9 | 2640 | 99.6 | Minus |
| 2L | 23513712 | 2L | 21201719..21202252 | 542..9 | 2520 | 98.1 | Minus |
| 2L | 23513712 | 2L | 19404347..19404402 | 116..61 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:35:57 has no hits.
UFO08660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:42 Download gff for
UFO08660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31624-RA | 69..613 | 1..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:29:49 Download gff for
UFO08660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31624-RA | 181..725 | 1..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:41 Download gff for
UFO08660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31624-RA | 181..725 | 1..546 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:41 Download gff for
UFO08660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21199401..21199944 | 1..546 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:29:49 Download gff for
UFO08660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21199401..21199944 | 1..546 | 98 | | Minus |
