UFO08661.5prime Sequence
1107 bp (1004 high quality bases) assembled on 2011-08-05
> UFO08661.5prime
CAGTCGACATGAAAAACTCAACTGTGCAAGACAGTTCACCGCAAGTGCCA
CAGAATGGCATGGTCACCTATGGCAGCGGGCTCGTCTTTGGCGGGAAAGT
TTATCCGGTATTGGTGGACGGAAAGCCAATACAGCCACCCTTAGGTGCTC
ATCAGGCAGCAATGCAACAGCGCATGCAGATGCAGCAGGTTCAGCCACAG
GCGCCACATACCAACTGCCCCAAGTCCATTGTCCAACAACCTATATATCA
ACGAATGGAGACCCGGTATCCTGCGCCCTCATACATGTCCAAGCCAAGCC
AACAGAGCTCTGTGAGTTGTCCTGGCCCAGTCATGGTGCAGCAGCACTCG
CCGTCTAACAATCTGGCGATGATGCAACCGTTGCAGGCGCAGATTTTACA
GCGCCAGCAAATGCAAACCTCCATGGGCAGTCCTTGCGGCTACTACAACC
TGCCAACGAATGCGGGTGGTGATTCCTGCGGCTGGGACGGCTATGCCATG
ATGCAGCCAATGGATGCCAACAAGCCGTATACCTTTGGCTGGAGTCTTAC
CGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAACGGGGCGAGAGTGT
CCATATTGCCACGTTTAATCAAACTGTGAAACTCACCCAGGATGCTGAAC
GAAAACTATCTCATAACCCTTTAGGAATAGGCAGGTTCACGTACACGCCC
AATCTTGCAATATATGTGTGAACTGCGGACTCTGCTGATTACATCGACGA
TGAAACG
UFO08661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12307-RA | 680 | CG12307-RA | 72..617 | 9..554 | 2700 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11651394..11651939 | 554..9 | 2700 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-26 23:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 6889..6972 | 951..1034 | 114 | 59.5 | Plus |
UFO08661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:51 Download gff for
UFO08661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12307-RA | 65..617 | 1..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:35:47 Download gff for
UFO08661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12307-RA | 65..617 | 1..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:04 Download gff for
UFO08661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12307-RA | 65..617 | 1..554 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:04 Download gff for
UFO08661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11651394..11651946 | 1..554 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:35:47 Download gff for
UFO08661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11651394..11651946 | 1..554 | 98 | | Minus |
