UFO08662.5prime Sequence
1145 bp (1045 high quality bases) assembled on 2011-08-05
> UFO08662.5prime
CAGTCGACATGCCGAAGAAGGGAAAAGACAAGGGGAAGAAAGGAAAGAAA
AGTGTTTTCAGAGCCAAGTCTACAGTGGTGCCCACAGCACCTCCAGAACC
AGTGTTCGATAGAAATTTGCCCGTTTTCTCCTTCGATCTTGTTATCACCC
GACTGGAGGTAAAGGGTGTGGTCCTGGCCGACGCAAGAAAACTGCTGGTG
AAGGTCAAATTTGGTGGCAACAATCTCAGTCTTACGGCTAGTAGAACCAA
TGTGAGCGAGTTCAAGCCGAATGCCAGTCACACCTTTCAGGCGGAGCCAC
CGAATCTAGCCCAGACAGTCGAAGAAAATGGCATAGACTTTGAGGTGGTG
TACGATGAGCAAGTTGTTGGCTTGGGTAAACTGAGCCTGCCCAAAAGATT
AAGCACAAGAATAAAGCTGGACATGAATTCATTCTCCTACACGAGCACTT
GTCCCCTGGAAATGGAGGGGAAGCCAGTTGGCGCATTAGAGTTCCTTTGC
AAGCTGTTCATCAAATGTGGCGATTATGCCAGAGAGGGCGAAACTTGCCC
CAATTTGGACAGGAACCTTAGCCCAAGGGACATAGTATTTGTGGTCGGCA
AATCGCAGGCCAATACCAGCTGCTGCGATCCCTGTCGAGATGCTCTGGAA
ATCGAGGCGAGAAAACAGAAAGACTACAGTATTCAATCGAGTTCTAGTCG
AAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGC
CCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGACATG
AAGCCATCACAAACGGCATGATGACTGATCGCAGCGGCATCAGCACTTGT
CGCCTTGCGTTTATATTTGCCATGGTGAACCGGGCTAGAGTTGTTCTATA
TGTCACGTTTAATCGACCTGTGAAACTCACTAGATGCTGAAACAA
UFO08662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3199-RA | 860 | CG3199-RA | 137..832 | 9..704 | 3450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14162845..14163368 | 9..532 | 2590 | 99.6 | Plus |
| 3R | 32079331 | 3R | 14163423..14163597 | 530..704 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:36:51 has no hits.
UFO08662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:52 Download gff for
UFO08662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3199-RA | 127..822 | 9..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:36:15 Download gff for
UFO08662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3199-RA | 137..832 | 9..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:04 Download gff for
UFO08662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3199-RA | 137..832 | 9..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:04 Download gff for
UFO08662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14162845..14163368 | 9..532 | 99 | -> | Plus |
| 3R | 14163426..14163601 | 533..705 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:36:15 Download gff for
UFO08662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9988567..9989090 | 9..532 | 99 | -> | Plus |
| arm_3R | 9989148..9989323 | 533..705 | 98 | -> | Plus |
