UFO08663.5prime Sequence
1121 bp (1010 high quality bases) assembled on 2011-08-05
> UFO08663.5prime
CAGTCGACATGCTTCCAATTCGGCAGAGTTTATACCAAAGAGCTCAAACT
CGATTTACAAAATTAAGATTTCCAAGATTTTTTAGCAAAGACGATTGCAA
TGGAAAGCAAGTAAAGAAGTTGAGCTTAAAAAATGTAGATGTGGCTGGGA
AAAGGGTTTTTATGAGAGTGGACTTTAATGTACCCATGAAAGATGGCAAA
ATAACCAACAACCAACGAATTGTTTCCGCACTTCCCAGTATTAAATATGC
CTTGGACAAGAAATGTAAGTCCTTGGTTTTGGCATCCCACTTGGGGCGTC
CGGATGGCAAAAAGAACAAAAAGTTTAGCCTGGAACCCGTGGCCAAGGAG
CTGGAGAGTGTGCTGGGCCAGCCGGTTCAATTCCTGGACGACTGCGTGGG
TGATAGCACCCTGAGAGCTTTGAAGGATCCCTCCGACGGCACTGTGTTCC
TGTTGGAGAATCTTCGTTTCTATGCCGAGGAGACGGGCAGCAGCAAGGAC
GATAACAAGAAGAAGGTCAAAGCAGATCCCGCGAAGGTGAAGGAATTCCG
AGCCAAGTTGGCGCAGCTGGGCGAGATCTATGTGAACGATGCCTTTGGAA
CAGCACATCGTCCGCATAGTTCCATGATGGGCGATGGCTACAAGGTGCGA
GCGGCTGGTTTCCTGCTGGACAAGGAACTGGAGTACTTTGCCAAGGTTCT
CCACGATCCGGCCAAGCCCTTTTTGGCCATTCTGGGTGGCGCCAAGATAG
CCGATAAAATTCCACTGATAACGAACCTCCTGAACAATGTAACGGCCATG
ATCATATCCGGTGGCATGGCCTTCACCTTTCTCAAAGTGCTCAATGGCAT
GAGATTGAAAGTCCCTCTTCGACGAGAAGGATCCGAGTTGGTCAACGACA
TAGTCTGCAAGCGAAAGAGATGACGTGAATATACTATTTCGATTGACTTT
GTCATAGCCATAGATCGACAAGAGCCGGATAAGTGACATGTGATGCAAAC
AGGCATAACCGAGACTGATGGGTCTGACCACGCCAGCATTCAGTCGATGT
TTGCTGGCGCCTTATTTGTTGCATCAAAACAATCGGTCTGACCGACCGCC
AGGCTTTGTCGAACGGCTATC
UFO08663.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9961-RA | 1440 | CG9961-RA | 11..1135 | 9..1113 | 4825 | 96.6 | Plus |
| CG9961-RB | 1429 | CG9961-RB | 11..1124 | 9..1113 | 4650 | 95.7 | Plus |
| Pgk-RE | 1893 | CG3127-RE | 922..1291 | 513..880 | 450 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2743847..2744542 | 960..271 | 3135 | 98.7 | Minus |
| 2L | 23513712 | 2L | 2744767..2744924 | 166..9 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 2744602..2744714 | 277..165 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 2747578..2747909 | 844..513 | 445 | 75.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:36:54 has no hits.
UFO08663.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:52 Download gff for
UFO08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1145 | 9..1120 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:36:46 Download gff for
UFO08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1145 | 9..1120 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:06 Download gff for
UFO08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1145 | 9..1120 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:06 Download gff for
UFO08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2744767..2744924 | 9..166 | 100 | | Minus |
| 2L | 2743670..2744537 | 276..1120 | 95 | <- | Minus |
| 2L | 2744604..2744712 | 167..275 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:36:46 Download gff for
UFO08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2743670..2744537 | 276..1120 | 95 | <- | Minus |
| arm_2L | 2744604..2744712 | 167..275 | 100 | <- | Minus |
| arm_2L | 2744767..2744924 | 9..166 | 100 | | Minus |
