UFO08666.5prime Sequence
1098 bp (1001 high quality bases) assembled on 2011-08-05
> UFO08666.5prime
CAGTCGACATGGCCTCACCTAGTCGGAGTTCCCAGCGATCCCTGCTTAAC
GCAGGCCTCCAATTGTTTACCACAAAGCTGGGTAGGACCCAGCACACGCT
TCCGCTGAGTGATTTATCCTCGCTGCATGGTGTCGACCTACATCATCAGA
ATACTGTACCGACTGGGATGTCCCAGCAGCTGGCGGATGTCCAGAAGCGC
ACCCAATTTCTTGAGGAGCGGAACCGCCAGCTCAGGAATCTGGCGCTGGA
TAAATCTGACCTCTTCGAGTCACGAACTGCCATGCTGTGCTCCCGAGCTT
TCGACATCAGTCAGGAACTGTTCGTAACCAGGATGAGGATTAACGACGTG
GAGAACGCCTGCACTGAACTTCGAAGTCGCATCCTGGACGTAAAGCTGCG
ACGCATCCAGCGTCTCCGGCTCCTCTGCCACGAGATACAGAAACTGCAAG
AAGCACTGGAACACCAGCTGCCCCCGATCCTGATGCACGTCTGGCACAGA
CTTTGTTTCCTATGGAACTGTGTGGACTGCCTGGCGCTTGTGTCCTGCGG
GGCCCGTCCCGTCTTCGAGGCAGAGAGCAAAATGGATAAAATGGATGCCC
TCAATCTCTTCGTGGCGGGCTTCGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCGACATGGAAGCATCACAAACGGCATGATGACCTGATC
GCAGCGCATCAGCACTTGTCGCTGCGTATATATTTGCCCATGTGAAACGG
GGCGAGGAGTGTCAATGCCACGTTTAATCAAACTGTGACTCACCCAGAAT
GCTGAACGAAACTTTCTCATTACCCTTTAAGAAATGCAGTACGTACGC
UFO08666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14054-RA | 920 | CG14054-RA | 122..736 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2065457..2065705 | 623..375 | 1245 | 100 | Minus |
| X | 23542271 | X | 2065944..2066089 | 243..98 | 730 | 100 | Minus |
| X | 23542271 | X | 2065758..2065892 | 376..242 | 675 | 100 | Minus |
| X | 23542271 | X | 2066149..2066238 | 98..9 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:02 has no hits.
UFO08666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:54 Download gff for
UFO08666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14054-RA | 116..745 | 1..631 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:37:48 Download gff for
UFO08666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14054-RA | 116..745 | 1..631 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:09 Download gff for
UFO08666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14054-RA | 116..745 | 1..631 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:09 Download gff for
UFO08666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2065448..2065703 | 377..631 | 98 | <- | Minus |
| X | 2065758..2065891 | 243..376 | 100 | <- | Minus |
| X | 2065945..2066088 | 99..242 | 100 | <- | Minus |
| X | 2066149..2066242 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:37:48 Download gff for
UFO08666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1960182..1960275 | 1..98 | 95 | | Minus |
| arm_X | 1959978..1960121 | 99..242 | 100 | <- | Minus |
| arm_X | 1959481..1959736 | 377..631 | 98 | <- | Minus |
| arm_X | 1959791..1959924 | 243..376 | 100 | <- | Minus |
