UFO08667.5prime Sequence
1132 bp (1022 high quality bases) assembled on 2011-08-05
> UFO08667.5prime
CAGTCGACATGCCGGCGATGGATGTGGACACTGCTCTCTTAACCATAGGT
TATGGGCTTGGTCAGGTGATCATTTTCATGGTGAGTTTCTTCATATACAT
GTACTCCGTAACTGAGTCCATGACTGCTGGCTATCTCGTGGTCCTGACCT
CCTGCGAGTTCGATACCTCGCCTAAAGAGAAGACCCTATTGGCCAATTCC
CTGCTGGGCGGGATGGTGGCTTCCGGATTGTTCATTGGCTTCCTGGCGGA
CAGGTATGGCCGCAAGTTCGTTATCCGATTGGCACTCGTAGGAGCGCTGT
CCTTCTCGGTGATTTCTGCTTTAATGCCGGATCTCTATTCGCTTTCTGTG
ATTCGGATTATTGTTGGAACTTTCCTCTCGGCGGTTGCATCTTTGCAGGT
AGGATTCCTCGGGGAGTTCCACGCAATCAAGTGGCGGCCAATAACGGTAG
CCATTTGTAGCCAATCTCAGGGTCTAGCTCTCATCTACTGTCCACTGGTG
GCCATGGCTATTCTGCCCAACAACTTCAATGTGGACCTCAGCAGCAGCTA
CAATCTACGCGTATGGCGATTCCTAATGATGTTCTTCATGATTCCCGGCT
GGTTGGCCCTCGTCGGAATTTGTCTGGTGCCGGAGACACCACATTTTCTC
ATGTCTGTCAATCGGCCGGACAAGGCCCTCCTGGCCCTTAAATGGATATG
CCGGATGAACAGGAAGAAGTGGGAGGACGTCGACATAACTTTGAGTGAAG
AGAAATCAAGCACAAACGATCAGGAAGGCTTCTGGAAGACTGTGTGGTAC
GAGTATAAGCTGCTCTTTTCCAAACCTCACGTCTTCAAGTTTTTTATTTG
TCTCTTTCTTATTTTTGGGATATTTTTTACATCCATTGGATTGGGCATCT
GGTTTCCAGTTATCCGCACATGGACAACTCTGGCTCCAACCGTTTTATGC
GACCTCGTCATAATAATCCAACATTTATAAATCATGAAGCGATGATACCA
ATGGACCGGATTCGAGTCACAAAGTTGCACGACGAGAATGACCACCTGAT
CGATCCGTCTACTTCCGCTTACCTACCTTGGAATGTTTATTCTGACTCGG
CGTTTGTACATGGATGACCGAGATGTATTTGC
UFO08667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33233-RC | 1612 | CG33233-RC | 71..1189 | 9..1119 | 4960 | 97.1 | Plus |
| CG33233-RE | 1049 | CG33233-RE | 498..1004 | 374..880 | 2475 | 99.2 | Plus |
| CG33233-RE | 1049 | CG33233-RE | 71..435 | 9..373 | 1750 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2660194..2660700 | 374..880 | 2475 | 99.2 | Plus |
| 3L | 28110227 | 3L | 2659805..2660131 | 47..373 | 1560 | 98.5 | Plus |
| 3L | 28110227 | 3L | 2660769..2660949 | 881..1057 | 475 | 91.8 | Plus |
| 3L | 28110227 | 3L | 2659709..2659750 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:37:06 has no hits.
UFO08667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:54 Download gff for
UFO08667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..1150 | 9..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:38:20 Download gff for
UFO08667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..1150 | 9..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:12 Download gff for
UFO08667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..1150 | 9..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:12 Download gff for
UFO08667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2659709..2659748 | 9..48 | 100 | -> | Plus |
| 3L | 2659807..2660131 | 49..373 | 98 | -> | Plus |
| 3L | 2660194..2660700 | 374..880 | 99 | -> | Plus |
| 3L | 2660769..2660976 | 881..1082 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:38:20 Download gff for
UFO08667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2659709..2659748 | 9..48 | 100 | -> | Plus |
| arm_3L | 2659807..2660131 | 49..373 | 98 | -> | Plus |
| arm_3L | 2660194..2660700 | 374..880 | 99 | -> | Plus |
| arm_3L | 2660769..2660976 | 881..1082 | 92 | | Plus |
