UFO08673.5prime Sequence
1127 bp (1020 high quality bases) assembled on 2011-08-05
> UFO08673.5prime
CAGTCGACATGGGGAATGGCATGAACAAGGTCTTGCCGGGACTTTATGTG
GGCAACTATCGCGACTCCAAGGATCACGCTCAGCTGGAAAGATTCAAGAT
CTCGCACATCATCGCCATACATGACAGTCCGCGGCGTTTGCTGCCGGACA
AGCACTACCTGTGCGTGATGGCCTCGGATACGCCAGACCAGAATCTCTCC
CAATACTTTTCCGTCTGCAACGACTTCATACACGCCGCCCGGCTTCGCGA
AGGCAACGTACTCATCCACTGCCTGGCGGGGATGTCGCGCTCGGTGACCG
TGGCCGTGGCCTATATCATGACGGCCACACACCTGAACTGGAAGGAGGCA
CTTAAGGTGGTTCGAGCTGGTCGCGCTGTAGCCAATCCAAATGCTGGATT
CCAGAGCCAACTGCAGGAGTTTGAGCAGTTTAAGCTGTCCGAGGAACGCC
GCCGCTTGAGGGAACGCTTCCCATCCTCGGCTCTGGAGCAACTGGATCGC
ACTAAGGTGGCCACCGCGCTGGACAACTACCAGGAGTTGCTGCAGAACCG
CGACATCTGCGAGGGTAACTGCTCCCGCGGCGAAAAATGTCCTACAGGTG
CGGACCAAGACGTAGATGGTGTTAATATTGGTCAGGGGGAGGAAGAAGAC
GAGGGTGAAGGCGAGGGCTTGGGCAAAGTCAGGCGAAGCTTGGCTTACAC
TCTAAACTTTGCGGTGGACCAATGGAAGAGCAGTACCATTAAAAAGGATC
CGAACAATGACCCCCCACCGGATTTTAGCTTGGGCAAGGACCTTATGCCA
AGTGTGCGTTACTACGATCCGGAGTGCGACAAGGGTCAATTTGTTAAGAA
TGTGGATTCGGACAATGATGAAGAACAGTATATTGCTTTCAGACCTCAAC
GAAGCTAGAAGCCAAGTCCACGTCAAATTAAAAAAACGACGTGTACCAAA
TCGGAATCCTGCACCAAAGCTGTCTGAGAGCAGCAGCTTCTAGACATCGT
TTGGCGCGCGGCCCAGTAGTGTCATATCATATCATTATCATATCATATTC
ACACTAGCCTAGGATCTGTCATGACTAGTGCCTGATCCACATAAAACGCC
GGCGCAACGAACGTTCTGAAACAAATC
UFO08673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10089-RA | 1569 | CG10089-RA | 555..1527 | 7..975 | 4765 | 99.6 | Plus |
| CG10089-RB | 1518 | CG10089-RB | 504..1476 | 7..975 | 4765 | 99.6 | Plus |
| CG10089-RC | 1070 | CG10089-RC | 76..1028 | 27..975 | 4665 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13468062..13468895 | 975..146 | 3970 | 99.5 | Minus |
| 3L | 28110227 | 3L | 13468952..13469072 | 147..27 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:21 has no hits.
UFO08673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:57 Download gff for
UFO08673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RA | 306..1291 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:40:21 Download gff for
UFO08673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RB | 255..1240 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:17 Download gff for
UFO08673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RB | 499..1484 | 1..984 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:17 Download gff for
UFO08673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13468054..13468894 | 147..984 | 99 | <- | Minus |
| 3L | 13468953..13469069 | 30..146 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:40:21 Download gff for
UFO08673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13461154..13461994 | 147..984 | 99 | <- | Minus |
| arm_3L | 13462053..13462169 | 30..146 | 100 | <- | Minus |
