UFO08674.5prime Sequence
1127 bp (1032 high quality bases) assembled on 2011-08-05
> UFO08674.5prime
CAGTCGACATGATGCACACACCCCGCCTGTCGAATATTAAGCGGGCATCG
GTGCTCCTCGTCACCGCCCTGCTCCTCTATGTCTTCGTTTTCTCCAGTGG
CTATCAGAAGTACCAGATCGAGGGCATTATCAAGCAGAGTCAACCGGAAA
AGGTCTGGGAGTATGTGGCGGATTTTAATAAGATGCGTCTGCTCAATCCC
ACCATTTTAAACTTCAAGATCCTAGCTGATCATGGCCACGCCCACGACTG
GCGTTACACGGTGCAATACACAGAGAGATTATCCCATTGGCCATACTGGC
TGAATACGGCCACGGCCAAGTACGTGGTCACCAAGTCATTGCCCGGAGTA
TCGCCCGTGGCCTATGCCATTAAGTCCACGCATCAGACTTGCTTCTTTGC
CGGATTCTATTGCCTACAATCACTGAGTGAATTCACGTTCAGAAACTCCA
ATGGTGATACCTTTGCCCAGGAGAACATCCAGTATCAGTGTCCACCACTC
TTGGGCGGCATGTGTAGGCGGGAACTGGAGTTCCAGCGCCAGGCGGTGAT
GCACAACTTAACGATAATATTCGGAAAACAGAGAGGAGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCTTGCGTAT
ATATTTGCCCATGTGAAACGGGGCGAGAGTGTCCATATGCCACGTTTAAT
CAAACTGGTGAACTCACCCAGGATTGCTGAAACGAAAACATATCTCATTA
ACCTTAGGAAATAGGCAGGTTCACGGTACACGCCAATCTGCAATTATTGT
GAACTGCCGAAATCGTCTTGATTCCAC
UFO08674.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6310-RA | 690 | CG6310-RA | 20..599 | 8..587 | 2825 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11069648..11069845 | 205..8 | 990 | 100 | Minus |
| 3L | 28110227 | 3L | 11069368..11069576 | 414..206 | 970 | 97.6 | Minus |
| 3L | 28110227 | 3L | 11069134..11069306 | 587..415 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:25 has no hits.
UFO08674.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:58 Download gff for
UFO08674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6310-RA | 5..592 | 1..593 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:40:51 Download gff for
UFO08674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6310-RA | 16..603 | 1..593 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:18 Download gff for
UFO08674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6310-RA | 16..603 | 1..593 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:18 Download gff for
UFO08674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11069368..11069576 | 206..414 | 97 | <- | Minus |
| 3L | 11069648..11069848 | 1..205 | 98 | | Minus |
| 3L | 11069130..11069306 | 415..593 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:40:51 Download gff for
UFO08674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11062230..11062406 | 415..593 | 98 | <- | Minus |
| arm_3L | 11062468..11062676 | 206..414 | 97 | <- | Minus |
| arm_3L | 11062748..11062948 | 1..205 | 98 | | Minus |
