UFO08675.5prime Sequence
1134 bp (1004 high quality bases) assembled on 2011-08-05
> UFO08675.5prime
CAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCAGCAACAGC
AGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTGGGCAAGAT
GGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCAGAGTGACG
ATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCAAGGTGGAG
GACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGCGTCGATCA
GTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATCGACACGCC
GCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACGACGAGCAG
TGCCGCCGCATCAACGAGCTGCTGAACAACCCACCATCCGCCCACCAGCG
CGGCGGCGGCGGCAGCAACGACGGCGATCTCTAGTACATGCTCAACAACA
TGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCCAGATGGGT
GGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCCTCGTCGCG
CAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCAGACGCCCG
AAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAATCGGGCAGC
AGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGTGCCGGCTC
CTCCGTTGATGCGGATGCCCCCGGTAAGAACTCAACCACATCGACCACAA
CGGCGTCAAAATCGACCGGAGCCTATGCCAATCCATTCCAAGCCTACTTA
TCCAATCTCTCCCCCGAACATGGCGCAGACGATCCCTGAATATTGACCTC
TCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCGATCC
GGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGATGTGAC
GATGATCGCAAGCAGCAGATCAGACAATATCACCTCCCCCACAGTTCCAG
CAGCTCTTGGCCCAGTTCTCAGTGCCCTGCAATCGCCCAGCTGGACCTGG
TGATCAGCATTCGAGTTGTTCACGAGCCATGCGCCGCCTTCTCTGCAATC
TTGAGATTGGCTGCTCTGGAAAGACTCGCCCCCG
UFO08675.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-RE | 1495 | CG13349-RE | 120..1230 | 8..1105 | 4980 | 97.5 | Plus |
| Rpn13-RD | 1482 | CG13349-RD | 107..1217 | 8..1105 | 4980 | 97.5 | Plus |
| Rpn13-RG | 1495 | CG13349-RG | 120..1230 | 8..1105 | 4980 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13959568..13960089 | 529..8 | 2565 | 99.4 | Minus |
| 2R | 25286936 | 2R | 13958888..13959398 | 1035..530 | 2155 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:29 has no hits.
UFO08675.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:58 Download gff for
UFO08675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13349-RE | 97..1220 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:41:21 Download gff for
UFO08675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RG | 111..1234 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:20 Download gff for
UFO08675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RG | 111..1234 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:20 Download gff for
UFO08675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13958806..13959398 | 530..1108 | 95 | <- | Minus |
| 2R | 13959568..13960092 | 1..529 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:41:21 Download gff for
UFO08675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9846311..9846903 | 530..1108 | 95 | <- | Minus |
| arm_2R | 9847073..9847597 | 1..529 | 98 | | Minus |
