UFO08676.5prime Sequence
1135 bp (1034 high quality bases) assembled on 2011-08-05
> UFO08676.5prime
CAGTCGACATGAGTAAAACGAGCTTAGCGACGCAGACCAATGGCACGGCG
GAAAATGGAAACTGTTTTGATATCCTCAAAGTGTCTAATTTGTTCGAAAC
CAGCCTTCTGGACGAGGATGACGTACAATTAGACGCATACTTGGCAGCCT
ACGAGGAAATAATGAAGTTCTTCCAGCTCATGGGCAGTGTCTTCAGTTTT
GTCAGCAGCGATGTGCGCAGTAAAATAGATATCTTATACGCCCTGAGAGC
CAAGGACGCGGAGGAGCAGGAACACTTTAATACCTTCAGAACCATGCTGG
ATTACGAGAAGGAGGCCCAGTTGCTTACTCAGAAGGGTTACGTGTCTGGC
AGTCGAACGCTGCTACGTCTTCATCGCGGTCTTGACTTTGTCTACGAGTT
TCTCAATCGGATCCAGGCGATACCCGACGACCAAAAGACTGTGGACGTGT
GCAAGGAGGCCTACGATGACACCCTGGGCAAGCATCACTCATTCCTCATC
CGCAAAGGAGCGCGCCTGGCTATGTACGCGATGCCCACTAGGGGAGATCT
TCTCAAGAAAGTGTGCTCCGATGTCGAGGCGGCCAAAGAGAACCTGCCTT
CCATGCTGAAGCATATGAGAACCAACTACGATCGCACAGAAGACCTCTAC
ACGCTATACGATCTACACAGCCTGCCTGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTAAT
TCATTAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCAGCGGCATCAGCACTTGTCGCTTGCGTATAAATATTTGCCAT
GTGAACCGGGGCGAGAAGTGTCATAGTGCCACGTTAATCAACTGGGTGAA
CCTCACCAGGATTGCTGAACCAAAACAATGTCCTA
UFO08676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30392-RB | 1080 | CG30392-RB | 98..766 | 9..677 | 3345 | 100 | Plus |
| CG30392-RA | 1141 | CG30392-RA | 98..766 | 9..677 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21291289..21291586 | 677..380 | 1475 | 99.7 | Minus |
| 2R | 25286936 | 2R | 21291642..21291859 | 384..167 | 1090 | 100 | Minus |
| 2R | 25286936 | 2R | 21291925..21292084 | 168..9 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:35 has no hits.
UFO08676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:59 Download gff for
UFO08676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30392-RA | 95..763 | 9..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:41:49 Download gff for
UFO08676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30392-RA | 98..766 | 9..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:21 Download gff for
UFO08676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30392-RA | 98..766 | 9..677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:21 Download gff for
UFO08676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21291289..21291581 | 385..677 | 100 | <- | Minus |
| 2R | 21291642..21291859 | 167..384 | 100 | <- | Minus |
| 2R | 21291927..21292084 | 9..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:41:49 Download gff for
UFO08676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17178794..17179086 | 385..677 | 100 | <- | Minus |
| arm_2R | 17179147..17179364 | 167..384 | 100 | <- | Minus |
| arm_2R | 17179432..17179589 | 9..166 | 100 | | Minus |
