UFO08677.5prime Sequence
1121 bp (1013 high quality bases) assembled on 2011-08-05
> UFO08677.5prime
CAGTCGACATGGAGTACGAGAAAATGTTGTACATGCCAGCAGCCAGTGAG
ATGCCTCACAGTCCGCAGCTGAAGCCACATCAGTTCCAGGCCCACACGCC
GACGGATCAGTACTCATCCTATGCGGACAACTTCGACCTGTCGCTGCTGC
CGCAGGAGTCCGCATCCATTCCCACCACAGTCTTCCAGTACAACGCCCCC
CAGATCAAGGTCGAGTGCGCCTGGGATAGCCAGCCCATCCAGCAGCAACA
GCAGCCCACTGCGCCCTATACCAACCCCTCCAGCCACCAGCTGATTCCTC
CGCCCGCCTATCCCCACAGTGCCTATCCCTCTCCGCAATCCAGTCCGCTG
CAGTCGGAGTTCGCTGCCTATGGGCTTGGCAGATTTGGCGGTAGCTACGA
CAGTCTGAACAGCCCATCGCCCTCGCTGGAGGCGGTTAGCATCAAGCAGG
AGCTGCACATCCTGCCACCCTCTCCGCCGGAGTCCAACTGCGAGACGCCA
TCACCCAGATCCTCCTGCGGGGAGAGCATCAAGGCCGAGCCCTTGGATGC
GGACATCGAGAGCCTCATCGATCTGAACTCTCTGCTGCAGCAGCAGAGTC
TACAAAGCCCACAGAATCTGCAGGACACCAAGCCCGATCACCAGCTACTG
CGGGAGTGCCTCGAAGACACCAGCTTCCAGAAGCGCCACAATCTGAAGCC
TCTGGCTCTGGAATCCTTCATCGGAGGCTTGGCCGAAGTGCGCGGCGACT
TTGAGCCCGTCATTTCACTGGCCCTAGAGCATGCCAAACGAGAGGCGGAC
GCCATCTGCGCGGAGCTGCAAATATCGCAGATCCCAATGGCTGGTCGCCC
GCCCAGGTACACGCATGGCTCCGATCCACCTTGGCCCAGTTCAGATTGCC
GCCGGTGGCCGATTTGGAGCTGCACTTCTGCGAAAACGGAGCCGCACTGG
CATTACTCAGCGGAGGAGGAATTCGTGCGCGACTACCAGAGAGCGGCAGC
ACGCTGCCCGCCAAGTTGAAATTTGAAGATGCTACGCGGACAGCCCGCTC
ATCAGCAGCATCCAGCAGTCTGCGAGCACTGATCACTGCAGCAGCTATGC
ATGCCATGGAACTGGACTACA
UFO08677.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ets98B-RA | 3402 | CG5583-RA | 555..1683 | 9..1121 | 5205 | 98.1 | Plus |
| Ets98B-RB | 2377 | CG5583-RB | 119..1207 | 49..1121 | 5005 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27743749..27744530 | 49..830 | 3910 | 100 | Plus |
| 3R | 32079331 | 3R | 27744588..27744752 | 827..991 | 730 | 98.8 | Plus |
| 3R | 32079331 | 3R | 27746411..27746516 | 990..1088 | 225 | 89.6 | Plus |
| 3R | 32079331 | 3R | 27737092..27737133 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:37:39 has no hits.
UFO08677.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:00 Download gff for
UFO08677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets98B-RA | 543..1661 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:42:20 Download gff for
UFO08677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets98B-RA | 545..1663 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:22 Download gff for
UFO08677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets98B-RA | 545..1663 | 1..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:22 Download gff for
UFO08677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27737082..27737128 | 1..45 | 91 | -> | Plus |
| 3R | 27743751..27744531 | 46..830 | 99 | -> | Plus |
| 3R | 27744592..27744752 | 831..991 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:42:20 Download gff for
UFO08677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23562804..23562850 | 1..45 | 91 | -> | Plus |
| arm_3R | 23569473..23570253 | 46..830 | 99 | -> | Plus |
| arm_3R | 23570314..23570474 | 831..991 | 98 | -> | Plus |
