UFO08678.5prime Sequence
1110 bp (1011 high quality bases) assembled on 2011-08-05
> UFO08678.5prime
CAGTCGACATGTCTGCCAGCCACAAACAGCGTTATAAAAATGCCGCCTTG
GACTCCACAGAGATGCGTCGTCGTCGCGAGGAGGTGGGCATCCAGTTGCG
AAAAAACAAACGCGAACAGCAGCTCTTTAAGCGACGCAATGTGGTTCTTG
AGCCGGCTACATCCTCAACATCAGCCGGAGTGGAGAGCAACACCGATAAC
GAACAGCAGGCTGCCGACATGCACATGGCTGACAGCAGCACTGGCGGTCA
AAACGAGGAAGCTGCTGGAAGCGGGGCACAGCCATCCGTAATCAACGAGG
AAATGATTCAAATGCTCTTCAGTGGACGTGAAAACGAACAGCTTGAGGCG
ACTCAAAAGTTCCGCAAACTGCTGTCCCGCGATCCCAATCCTCCCATTGA
GGAAGTCATCCAGAAGGGGATAGTGCCACAGTTTGTCACCTTTTTGCGAA
ATAGCGCAAATGCCACGCTGCAGTTCGAGGCCGCCTGGACGCTAACGAAC
ATCGCATCGGGCACCTCGCAACAGACCAAGGTGGTTATCGAGGCCGGGGC
AGTGCCTATCTTCATTGATTTGCTCTCCAGTCCCCATGATGATGTTCAGG
AACAGGCCGTGTGGGCCCTAGGCAACATAGCCGGTGACTCACCCATGTGT
CGAGACCATTTGCTCGGCTCCGGCATTCTAGAGCCTCTCCTGCATGTATT
GAGCAACTCGGATCGCATTACCATGATACGGAATGCGGTGTGGACACTTT
CAAACTTGTGCCGCGGCAAAAGCCCTCCCGCAGACTTTGCCAAAATTAGC
CATGGTCTACCAATACTGGCACGGTTGCTGAAGTACACTGATGCGGATGT
ACTAAGCGATACTTGCTGGGCCATAGCTACCTGTCAGATGGTCCCAATGA
TAAAATCCAGGCTGTAATTGATGCGGTGTTTGCCGTCGCCTGGATGAGCT
GCTATTACATCCTCAGCAAACGTGAGCACAGCTGCTCTGAGGGCCGTGGG
CAATTTTTGTGAACAGCGACGATCAGCAGACCCAAGTTAATTTGGGGTAA
CAACGCTTGACTGCATAGCCCACCTGCCTGCAATCGACGGCGACATCCAG
AGAGATCTGC
UFO08678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha1-RA | 2322 | CG8548-RA | 109..1198 | 5..1092 | 5055 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19808196..19808684 | 206..694 | 2445 | 100 | Plus |
| 3L | 28110227 | 3L | 19808744..19809007 | 695..956 | 1205 | 98.9 | Plus |
| 3L | 28110227 | 3L | 19807933..19808138 | 5..210 | 1015 | 99.5 | Plus |
| 3L | 28110227 | 3L | 19809075..19809167 | 957..1049 | 250 | 89.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:37:43 has no hits.
UFO08678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:00 Download gff for
UFO08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 91..1148 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:42:52 Download gff for
UFO08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 106..1163 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:24 Download gff for
UFO08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 106..1163 | 1..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:24 Download gff for
UFO08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19808744..19809007 | 695..956 | 98 | -> | Plus |
| 3L | 19807930..19808137 | 1..209 | 98 | -> | Plus |
| 3L | 19808200..19808684 | 210..694 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:42:52 Download gff for
UFO08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19801030..19801237 | 1..209 | 98 | -> | Plus |
| arm_3L | 19801300..19801784 | 210..694 | 100 | -> | Plus |
| arm_3L | 19801844..19802107 | 695..956 | 98 | -> | Plus |
