UFO08679.5prime Sequence
1113 bp (1022 high quality bases) assembled on 2011-08-05
> UFO08679.5prime
CAGTCGACATGTTGGAGGTGGACAAGATCCTAGAGAAGTGCGGCGACTTC
AGCCGTCTGCAGATGATAATGCTTCTGCTCTTCTGTGTGATCAACGTTCT
TTCAGCCCTGCACTACTACTCCCAAACTATCATCAGCTTCGTTCCCAAAT
ACTGGTGTGCAGATGGTTTGCCCGCCAGCATTGAGTCTCCAGTTGATTCG
AGCTGCCTGCCATTGAACCGGAATATTAGCACTCCGAATACGTGCTACAG
CTATAACTACGAGCTATACATGGGCTACCAGAGCTTTCCCAGCGAAATGG
ATTGGGTGTGCGCCGATGCCTGGAAACTCACGCTCGGCCAGTCCATGTTC
TTTGTGGGCTCTGTGGTGGGCTCTATGGTTCTGGGCTACCTGGCGGATGT
GGTTGGACGTCTGCCCATTCTGATCGTGGCCAACCTGATTGCTATGACAG
GCAATCTACTTACCATATGGAGCACCAATGTCACGCTTTTCTGTATGTTT
CGCATGATTTCCGGCATTGCTACGGATAGCAACTTTGTGATGATGTACAT
TTTGGTTATGGAGTACATGCGGCCATCGGTGCGCACCCTTGGCCTGAGCA
TCTGCATTGGATTTTTCTACTGTCTAGGCTCGATGGCGGCACCCTGGATC
GCCGTGCTCATGCGCAGCTGGCGGGGATTCCTACTGACCACCTCCTTGCC
CCTGCTGGTGGTGCCATTCTTCTACCTCATCGTGCCTGAAAGCATTCAGT
GGCTGATTTCCAAGCAGAAGTATGACAGCGCAGTTGTCTGCCTCAAAAGG
GTAGCCAAGATAAATGGACGGCACGTGGAAAGAGAGTGCCTACGCGGAGT
TCATCGAGGAGTGTAAGTGCAGTCAGCAAACCAGAAGGCATCACCCCATC
TACTTGATCTGTTCCAAACGCCCCGACTCCGTCGCCATACCCTCATCTCT
TCTCAAGTCATGGTCATCACCCTCTGCTACGATGCGATTCTCGCAACGTT
CAGGACTTGGCATTCGCCATTTGGTGATGTTCCTGCTGACGCCACGCCAT
CTGGCGGCTGTCTGTCATCATCGCTCAAGATTCGCATCGGTCGAGGCAAT
GCGTCCCCCTCTG
UFO08679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7342-RB | 2190 | CG7342-RB | 371..1489 | 9..1112 | 5000 | 97.5 | Plus |
| CG7342-RA | 2135 | CG7342-RA | 316..1434 | 9..1112 | 5000 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19604315..19604716 | 154..555 | 2010 | 100 | Plus |
| 3R | 32079331 | 3R | 19604877..19605269 | 555..947 | 1870 | 99.5 | Plus |
| 3R | 32079331 | 3R | 19604111..19604259 | 9..157 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:37:47 has no hits.
UFO08679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:01 Download gff for
UFO08679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7342-RB | 367..1489 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:43:21 Download gff for
UFO08679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7342-RA | 312..1434 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:26 Download gff for
UFO08679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7342-RA | 312..1434 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:26 Download gff for
UFO08679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19604107..19604256 | 1..154 | 97 | -> | Plus |
| 3R | 19604316..19604716 | 155..555 | 100 | -> | Plus |
| 3R | 19604878..19605283 | 556..958 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:43:21 Download gff for
UFO08679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15429829..15429978 | 1..154 | 97 | -> | Plus |
| arm_3R | 15430038..15430438 | 155..555 | 100 | -> | Plus |
| arm_3R | 15430600..15431005 | 556..958 | 98 | -> | Plus |
