UFO08687.5prime Sequence
1081 bp (996 high quality bases) assembled on 2011-08-05
> UFO08687.5prime
CAGTCGACATGGCTGCCACTCGTCGTCTGACACGGGAACTCTCCGATCTG
GTTGAGGCCAAGATGAGCACTCTGCGCAACATCGAGAGTAGCGATGAGTC
CCTGCTGATGTGGACGGGTCTTTTGGTTCCGGAAAAGGCGCCCTACAACA
AGGGCGCCTTCCGCATCGAAATCAACTTCCCGCCCCAGTATCCCTTTATG
CCACCAAAGATCCTATTCAAGACGAAAATCTATCACCCCAACGTGGATGA
GAAGGGGGAGGTGTGCCTGCCCATCATCAGCACAGACAACTGGAAGCCCA
CAACGCGCACAGAGCAGGTGCTCCAGGCCCTGGTAGCCATCGTCCACAAC
CCGGAGCCAGAACATCCGCTTCGTTCTGACCTGGCCGAGGAGTTCGTAAG
GGAGCACAAGAAGTTCATGAAGACGGCCGTAGAGTTCACCAAGAAGAATG
CGGAGAAGCGACCAGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTG
GTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATCTCAATAAAC
CCTTTAGGAAATAGGCCAGGTTTCACGTAACACGCCACATCTGCGAATAT
ATGTGTAGAACTGCGAAATCGTCTGCTATTCACTCCAGAGCGATGAAAAC
GTTCAGGTGCTCATGGAAACCGTGTTAACAA
UFO08687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc84D-RA | 637 | CG12799-RA | 99..557 | 9..467 | 2280 | 99.8 | Plus |
| Ubc10-RA | 999 | CG5788-RA | 401..746 | 101..446 | 425 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7518900..7519358 | 467..9 | 2280 | 99.8 | Minus |
| 2R | 25286936 | 2R | 17788665..17789010 | 446..101 | 425 | 74.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:38:08 has no hits.
UFO08687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:05 Download gff for
UFO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 93..562 | 1..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:45:43 Download gff for
UFO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 93..562 | 1..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:35 Download gff for
UFO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 93..562 | 1..472 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:35 Download gff for
UFO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7518900..7519363 | 1..467 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:45:43 Download gff for
UFO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3344622..3345085 | 1..467 | 98 | | Minus |
