UFO08693.5prime Sequence
1112 bp (974 high quality bases) assembled on 2011-08-05
> UFO08693.5prime
CAGTCGACATGGTCTTGGGACTGGATAAGCGAGCACTGTGGGGCGCGTTG
CCCCTGCTGGGATTTGCCATTGGCCACTTCCTGGACAAGAAGGAAACGGA
ACGTATGACCATGTTCCGGGACAAGAGTGCCCTATACGGCCGTCCCGCCG
GCAGCGAGGGTAAGGCGCCATCCTGGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAAC
AAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATA
CGAAATTCCGGATGAATCATTCATCAGGCGGGCAGGAATGTGAATAAAGG
GCCGGATAAACTTGTTGCTTTATTTTTCTTTACGGTCTTAAAAAGGCCGT
TATATTCAAGCTGAACCGGTCCTGGGTATAGGTACATTGAAGCAACTGAC
TGAAATGGCCTCAAAATGTTCTTTACGAATGCCATTTGGGATTTAATCAA
CGGGTGCTATTCCAGGTGATTTTTCTCAGTTTAAGCCTCCCTTAGCCTCT
GAAAGTATCAAA
UFO08693.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18624-RD | 649 | CG18624-RD | 401..569 | 8..176 | 845 | 100 | Plus |
| CG18624-RC | 413 | CG18624-RC | 165..333 | 8..176 | 845 | 100 | Plus |
| CG18624-RE | 575 | CG18624-RE | 327..495 | 8..176 | 845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7893133..7893301 | 176..8 | 845 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 746..813 | 123 | 68.1 | Plus |
UFO08693.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:09 Download gff for
UFO08693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18624-RB | 258..434 | 1..182 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:48:36 Download gff for
UFO08693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18624-RE | 324..500 | 1..182 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:46 Download gff for
UFO08693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18624-RE | 324..500 | 1..182 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:44:46 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 14:48:36 has no hits.
