UFO08694.5prime Sequence
1103 bp (980 high quality bases) assembled on 2011-08-05
> UFO08694.5prime
CAGTCGACATGTCCATTGCGAAGCGTGTGCAGCAATGGGCAACGTTCGCG
CGCACTTGGCACATTTACGATTGCACTTGGCAGAATCCATTCGAGTCGGC
AAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCATTTACCACC
CAATGAATGACTGCGGGGATCATGTGGTGCTGATCAACACGCGGGAAATC
GCCTTGCCCGGTGACGAGTGGGTGAAGAGGGTTTACTTCCACCACACCGG
CTATCCTGGTGGCGCTTCGTGGACCCTGGCGTGGCAGCTGCACGAGAAGG
ATCCCACGATGGTGATGAAGAAGGCCGTGTACAACTCGATGCGCGGAAAT
CTGCAGCGCAGGCACACCATGCAAAGACTGCACTTGTTCGCCGACGATCA
GGTGCCCGAGGAAATCCTGCAAAACGTCACGAATCAAATCCGCACGCCGC
GCTCTATTCCCCAGCGTCTGGATCATATCGACAAAGAAACGCTGGAGAAC
TTCCCCAACATTATGGATTATCCCAAGGATTATATCTTGCGTGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCATATTTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGCCATCAGCACCTTGTCG
CCTTGCGTATATTATTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCC
ATATTGGCCACGTTTAAATCAAACCTGCGAAACTCACCCAGGGATTGCCT
GAGAGATAAAACATATTCCTCAATAAACCTTTTAGGAAAGCCAGGTTTTC
ACCGTACACTGCCAACTCTTGCAATATTGTGATAGAAACCTGCCGAAATC
GTC
UFO08694.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL13-RA | 671 | CG10603-RA | 89..622 | 9..542 | 2640 | 99.6 | Plus |
| CG10602-RE | 2270 | CG10602-RE | 89..236 | 9..156 | 725 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18858077..18858462 | 542..157 | 1915 | 99.7 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 156..31 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:51 has no hits.
UFO08694.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:02 Download gff for
UFO08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 31..573 | 9..549 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:43:50 Download gff for
UFO08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 89..631 | 9..549 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:28 Download gff for
UFO08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 89..631 | 9..549 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:28 Download gff for
UFO08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18858952..18859075 | 33..156 | 99 | <- | Minus |
| 2L | 18859137..18859160 | 9..32 | 100 | | Minus |
| 2L | 18858077..18858462 | 157..542 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:43:50 Download gff for
UFO08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18858077..18858462 | 157..542 | 99 | <- | Minus |
| arm_2L | 18858952..18859075 | 33..156 | 99 | <- | Minus |
| arm_2L | 18859137..18859160 | 9..32 | 100 | | Minus |
