UFO08701.5prime Sequence
1144 bp (1041 high quality bases) assembled on 2011-08-05
> UFO08701.5prime
CAGTCGACATGGATATTTTTTCCAATTGTCCGGGCTTTTGCCCCTCCTGC
GGCTCCATTCTGCCCGAGCTTCAAGTCAAGGGCAATGTGATTTGCTACAA
CTGCAAGAAGGAGTTTCAGCCAGATGTTTACAGCGGCGAGAAGTCCGAGT
TTACCATACACTTCAACACCTACGATCCCAGCAAGGTGTTCAACAGGACG
AAAAGGGAGTCGGAATCGGACGCGGATGGCCCCGTTGTGGAGAGGAAGTG
TCCCAAGTGCAACCACGACAAGATGTCCTATGCCACCCTGCAGCTTCGAT
CGGCGGACGAAGGCCAGACGGTGTTCTTTACCTGCCTTAAGTGCAAATTC
AAAGAATCCGAAAACTCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
ACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC
GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGC
GATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTACAGGGTGAACACT
ATCCCATATCAACAGCTCACGTCTTTCATTGCCATACGAAATTCCGATGA
GACATCATCAGGCGGCAAGAAATTGTGAATAAGGCCGAATAAACCTGTGT
GCCTATTTTCCTTACGGTTTGAAAAGGCCGTAATATCACACTGA
UFO08701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI12-RA | 530 | CG13418-RA | 81..441 | 8..368 | 1805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21777378..21777598 | 346..126 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 21777649..21777767 | 126..8 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:40:48 has no hits.
UFO08701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:28 Download gff for
UFO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI12-RA | 16..387 | 1..376 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:02:08 Download gff for
UFO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI12-RA | 75..446 | 1..376 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:40 Download gff for
UFO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI12-RA | 75..446 | 1..376 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:40 Download gff for
UFO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21777292..21777313 | 347..368 | 100 | <- | Minus |
| 3R | 21777378..21777597 | 127..346 | 100 | <- | Minus |
| 3R | 21777649..21777771 | 1..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:02:08 Download gff for
UFO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17603014..17603035 | 347..368 | 100 | <- | Minus |
| arm_3R | 17603100..17603319 | 127..346 | 100 | <- | Minus |
| arm_3R | 17603371..17603493 | 1..126 | 96 | | Minus |
