UFO08702.5prime Sequence
1119 bp (1005 high quality bases) assembled on 2011-08-05
> UFO08702.5prime
CAGTCGACATGGAGTTCAACAATCGCCTCTTGCTGAAGATCATCGAGCTG
GCCATCGCCATCGCCTGCATTGTGCTATACGAGACGGTTGGTAACTTGTC
CCTCCATCCGGTGATTGTGGCCGGCACCGTTGGTGGCTACACCGTCATCT
GCGGCGTTCTGCTGATCGGTCATGTGCTCAACTCGCTGGTGGAGAAGCGC
CTGAACGCCCTATTCTCGCTGATCGGCTGCCTGCTGTTCGTGGCCTCCGG
AGCACTGGTGATCGATGAGTGGCACGGCGGACTCCTGAATACCGATAGGA
AGCGCCAGGCCATTGGAGCCGGTTCCTTGATGATCATCAATGCGGCTGTC
TTCCTTCTGGACACTCTCTGCATCTGCCGGACGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGTTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
AACATATTCTCAATAAACCCTTTAGGGAATAGGCCAGGTTTTCACCGTAC
ACGCCACATCTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTAT
TCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGGGTA
ACAAGGTGAACACTTTCCCATATCACAGCCTCACGTCTTCATTGCATACG
AAATTCGGATTGACCATCCATCAGCGGCAGATGTGATAAGCTGAATAACC
TGTCTAATTCTACGGCTTA
UFO08702.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44325-RE | 1399 | CG44325-RE | 121..496 | 8..383 | 1865 | 99.7 | Plus |
| CG44325-RB | 741 | CG44325-RB | 121..496 | 8..383 | 1865 | 99.7 | Plus |
| CG44325-RD | 836 | CG44325-RD | 121..495 | 8..382 | 1860 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9071587..9071802 | 383..168 | 1065 | 99.5 | Minus |
| X | 23542271 | X | 9071870..9071990 | 170..50 | 605 | 100 | Minus |
| X | 23542271 | X | 9078336..9078379 | 51..8 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:40:52 has no hits.
UFO08702.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:28 Download gff for
UFO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7267-RB | 110..500 | 1..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:02:38 Download gff for
UFO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44325-RB | 114..504 | 1..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:42 Download gff for
UFO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44325-RB | 114..504 | 1..391 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:42 Download gff for
UFO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9071872..9071989 | 51..168 | 100 | <- | Minus |
| X | 9078337..9078384 | 1..50 | 94 | | Minus |
| X | 9071587..9071801 | 169..383 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:02:38 Download gff for
UFO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8965905..8966022 | 51..168 | 100 | <- | Minus |
| arm_X | 8972370..8972417 | 1..50 | 94 | | Minus |
| arm_X | 8965620..8965834 | 169..383 | 99 | <- | Minus |
