UFO08703.5prime Sequence
1157 bp (1013 high quality bases) assembled on 2011-08-05
> UFO08703.5prime
CAGTCGACATGAGCTCGAGCAGAACGAGGAACGGCCCCACGCTTAATTTC
AAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCGCTGGTGCT
GCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCACCCTGCAGG
CTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAAGGGCGCAG
TTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCCCTGGGACC
CATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGACATAACGG
ACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGCTCCGGCAA
ATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAGACTGATTT
GGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATATGCGCGCA
CGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACGAGGGGGTG
GCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAGTTGAGCCA
ACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGATACGGATA
ACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAGATCCTGCG
GGCCAGCGGTCCTGTTGCGGCATTGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGACTGATC
GCAGCGGCATCAGCACTTGTCGCTGCGTATATATTTGCCATGGTGAAACG
GGGGCGAAGAAGTTGTCCATATTGCCACGTTTATTCAACTGGTGACTCAC
CCAGGAATGCTGAACGAAAACCTTCCATTACCTTAAGGCAAATAGCCAGC
TTCTCAC
UFO08703.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab21-RC | 1064 | CG17515-RC | 159..824 | 9..674 | 3330 | 100 | Plus |
| Rab21-RD | 1050 | CG17515-RD | 145..810 | 9..674 | 3330 | 100 | Plus |
| Rab21-RA | 1077 | CG17515-RA | 234..837 | 71..674 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23012380..23012983 | 674..71 | 3020 | 100 | Minus |
| X | 23542271 | X | 23013041..23013106 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:40:56 has no hits.
UFO08703.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:29 Download gff for
UFO08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab21-RC | 150..823 | 1..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:03:07 Download gff for
UFO08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab21-RD | 141..814 | 1..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:44 Download gff for
UFO08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab21-RD | 141..814 | 1..680 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:44 Download gff for
UFO08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23012376..23012981 | 73..680 | 99 | <- | Minus |
| X | 23013043..23013110 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:03:07 Download gff for
UFO08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22414212..22414817 | 73..680 | 99 | <- | Minus |
| arm_X | 22414879..22414946 | 1..72 | 94 | | Minus |
