Clone UFO08704 Report

Search the DGRC for UFO08704

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:87
Well:4
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRpL29-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08704.5prime Sequence

998 bp (940 high quality bases) assembled on 2011-08-05

> UFO08704.5prime
CAGTCGACATGGCCAAGTCCAAGAACCACACAAATCACAACCAGAACAAG
AAGGCCCATCGTAATGGCATCAAGCGCCCGCTGCGCAAACGCCACGAGTC
CACTCTGGGTATGGATGTGAAATTCCTGATCAACCAGCGCTACGCACGCA
AGGGAAACCTTTCCCGCGAGGAGTCCGTGAAGCGCTACAACGAGCGCATC
GCTTCCCAGAAGGGCAAGCCAAAGCCTGTTACTCTGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTTACCG
TAACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGGAAATCGTC
GTGGTATTCACTCCAGAGCGATGAAAACGTTTTCAGTTTGCTCATGGAAA
ACGGTGTACAAGGGTGAACACTATCCCATATCACAGCTCACCGTCTTTCA
TTGCCATACGAAATTCCGGATGAGCATTCATCAGGCGGGCAGAATTGTTC
ATAAAGGCCGGATAAAACTTTGTGCTTATTTTTTCTTTTACGGTCTTT

UFO08704.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpL29-RD 304 CG10071-RD 29..256 9..236 1125 99.6 Plus
RpL29-RB 389 CG10071-RB 114..341 9..236 1125 99.6 Plus
RpL29-RA 329 CG10071-RA 54..281 9..236 1125 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21294231..21294356 111..236 615 99.2 Plus
2R 25286936 2R 21294060..21294161 9..110 510 100 Plus
Blast to na_te.dros performed 2014-11-26 23:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 232..299 805..872 132 69.6 Plus

UFO08704.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:29 Download gff for UFO08704.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL29-RB 99..326 9..236 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:03:37 Download gff for UFO08704.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL29-RA 54..281 9..236 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:46 Download gff for UFO08704.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL29-RA 54..281 9..236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:46 Download gff for UFO08704.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21294060..21294161 9..110 100 -> Plus
2R 21294231..21294356 111..236 99 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:03:37 Download gff for UFO08704.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17181565..17181666 9..110 100 -> Plus
arm_2R 17181736..17181861 111..236 99 == Plus