UFO08705.5prime Sequence
1106 bp (998 high quality bases) assembled on 2011-08-05
> UFO08705.5prime
CAGTCGACATGTCGAAGAGAGGACGTGGAGGTACCGCGGGAGGCAAGTTC
CGCATCTCCCTCGGTTTGCCCGTGGGCGCCGTGATGAACTGTGCCGACAA
CACCGGAGCCAAGAACCTGTACGTGATCGCCGTCCACGGAATCCGCGGTC
GCCTTAACCGTCTGCCCGCCGCTGGTGTCGGCGACATGTTCGTGGCCACC
GTGAAGAAGGGAAAGCCCGAGCTCAGGAAGAAGGTCATGCCTGCCGTGGT
TATTCGGCAGCGCAAACCGTTCAGGAGGAGGGACGGGGTGTTTATATACT
TTGAGGACAATGCCGGGGTAATAGTAAACAACAAGGGCGAAATGAAGGGC
TCGGCCATCACTGGACCGGTGGCCAAGGAATGCGCCGATCTGTGGCCCCG
TATTGCATCCAATGCAAGCTCTATAGCTTTTTAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT
AAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCATAAACCCTTTAAGGGAAATAGGCCAGGTTTCACGTACACGCCAC
ATCTTGCGAAAATATGTGTAGAACTGCGAAATCGTCGTGTATTCACTCCA
GAGCGATGAAACGTTCAGTTGCTCATGGAAACGTGTAAAAGGTTGAACAC
TATCCATTATCACCAGCCTCACGTCTTCCTTGCATACGAATCCGGATGAA
CATCCA
UFO08705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL23-RA | 542 | CG3661-RA | 68..486 | 9..427 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22854645..22854860 | 20..235 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 22855443..22855638 | 232..427 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:41:05 has no hits.
UFO08705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:30 Download gff for
UFO08705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23-RA | 69..499 | 1..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:04:05 Download gff for
UFO08705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23-RA | 61..491 | 1..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:48 Download gff for
UFO08705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23-RA | 61..491 | 1..434 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:48 Download gff for
UFO08705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22854645..22854858 | 20..233 | 100 | -> | Plus |
| 2R | 22855445..22855638 | 234..427 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:04:05 Download gff for
UFO08705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18742168..18742381 | 20..233 | 100 | -> | Plus |
| arm_2R | 18742968..18743161 | 234..427 | 100 | == | Plus |
