UFO08706.5prime Sequence
1107 bp (1037 high quality bases) assembled on 2011-08-05
> UFO08706.5prime
CAGTCGACATGAAGACACCGGACACCAAAGCCAAGTTGCTGAATAATATA
AGTCTATCTAAACACCTGTCTTCCAAGAAAGGCGGCTCTCGCACTAGTAA
CTGCGGCAATTGTCTGGAATTCTCCGTACTCACGCGTCTCTCCAGCGTGC
CCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAG
GGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATA
GGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAA
ACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCA
GTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCAC
CAGCTCACCGTCTTTCATTGCCATACGAAATTCCCGGATGAGCATTCATC
ACGCGGGCAAGAATGTGAATAAAGGCCGGATAAACTTGTGCTTATTTTTC
TTTACGTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAG
TACATTGAGCAACTGACTGAAATGCCTCAAAATGTTCTTTACGATGCCAA
TGGGAAAATATCAACGGTGGTATATCAGTGAATTTTTTTCTCCATTTAAG
CCTTCTTAGCTCTGAAAGAATCCATAACTTTCGAATAGCATAATTAACCG
AAGTTAT
UFO08706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42305-RC | 1018 | CG42305-RC | 453..596 | 9..152 | 720 | 100 | Plus |
| CG42305-RB | 779 | CG42305-RB | 92..235 | 9..152 | 720 | 100 | Plus |
| CG42305-RA | 657 | CG42305-RA | 92..235 | 9..152 | 720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18813296..18813397 | 51..152 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 18813100..18813143 | 9..52 | 220 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 721..788 | 123 | 68.1 | Plus |
UFO08706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:31 Download gff for
UFO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17325-RA | 85..238 | 1..156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:04:37 Download gff for
UFO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42305-RB | 86..239 | 1..156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:50 Download gff for
UFO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42305-RA | 86..239 | 1..156 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:50 Download gff for
UFO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18813094..18813143 | 1..52 | 92 | -> | Plus |
| 2L | 18813298..18813397 | 53..152 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:04:37 Download gff for
UFO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18813094..18813143 | 1..52 | 92 | -> | Plus |
| arm_2L | 18813298..18813397 | 53..152 | 100 | == | Plus |
