UFO08709.5prime Sequence
1118 bp (996 high quality bases) assembled on 2011-08-05
> UFO08709.5prime
CAGTCGACATGCACAAAATAGCAGCAGCGCCGCCTCCATCGGCAACGCCC
GGCGGAGGACTGGAGACGCCCCTGGCGGCGCCAAAATACGGCACACTAAT
ACCCAATCGCATCTTTGTGGGTGGCATCAGCGGCGATACCACCGAGGCTG
ATCTAACCCGCGTCTTCAGCGCCTATGGCACGGTAAAGAGCACCAAAATC
ATCGTGGATCGAGCAGGTGTGAGCAAGGGCTACGGATTCGTCACCTTCGA
GACGGAGCAGGAGGCGCAAAGACTGCAAGCGGATGGCATTACCGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCT
GAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTT
TTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGA
AATCGTCGTGGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCAT
GGAAAACGTGTAACAAGGTGAACACTATCCCATATCACCAGCTCACGTCT
TTCATGCATACGAAATTCGATGAGCATCATCAGCGGCAGATGTGATAATG
CGATAAACCTGTGCTTATTTCTTTACGTCTTTAAAGCCGTATTCAGCTGA
CGTCTGGTTATAGGTACTGGACACTGACTGGATGGCTCAATGTCTTACAG
TGCATGGATTGACACGTG
UFO08709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bol-RE | 2023 | CG4760-RE | 629..913 | 9..293 | 1425 | 100 | Plus |
| bol-RF | 6538 | CG4760-RF | 780..1057 | 9..286 | 1390 | 100 | Plus |
| bol-RG | 2930 | CG4760-RG | 1199..1476 | 9..286 | 1390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9112633..9112789 | 285..129 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 9113046..9113167 | 130..9 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:41:22 has no hits.
UFO08709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:33 Download gff for
UFO08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bol-RE | 587..879 | 1..293 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:06:05 Download gff for
UFO08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bol-RE | 621..913 | 1..293 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:55 Download gff for
UFO08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bol-RE | 621..913 | 1..293 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:55 Download gff for
UFO08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9112633..9112787 | 131..285 | 100 | <- | Minus |
| 3L | 9113046..9113172 | 1..130 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:06:05 Download gff for
UFO08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9105733..9105887 | 131..285 | 100 | <- | Minus |
| arm_3L | 9106146..9106272 | 1..130 | 96 | | Minus |
