UFO08712.5prime Sequence
1129 bp (1033 high quality bases) assembled on 2011-08-05
> UFO08712.5prime
CAGTCGACATGCCGTACATAATCATACGGGGGAATCTAGCCTCCTACAGC
CACAAATATCCATGGAGGGTGCTCGTCTCCGGGTTGAAAGCTGACGACAT
CGAGCAGTTGAACAAGTTCTCCTGCGGCGGCTACAGCGACGAGTCCACCA
TCGTCTACTTAGTGCATCCTTGTCGGATTTTATCGGCGCTAGAAATCCTG
GGATTTCGCGTAGTGGCCAGCTCATCGACTGCCGTGAAGCAGGACTACAA
CGAGTACATGTGGACGATGCGCAAGGAGTTCGACGAACCAGAACCCTTGG
AAGCCGAGTCCGTGGTGCGAGAAAATCTATCGAATATTGGCCGCGAGGCA
GCCAGTTTAGGCAACTATCACAAGGTGGATTCGCCTGAAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGT
CGTGTATTCACTCAAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAAAC
GGTGTACAGGGTGAACACTATCCATATCACAGCTCACGTCTTTCATTGCC
ATACGAAATCGGATGACATCATCAGCGTCAGATGTGAATTAGGCCGGATA
AACCTGGGCTAATTTTCTTACCGGTCTTT
UFO08712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44001-RE | 2431 | CG44001-RE | 156..536 | 9..389 | 1905 | 100 | Plus |
| CG44001-RD | 2415 | CG44001-RD | 140..520 | 9..389 | 1905 | 100 | Plus |
| CG44001-RA | 2691 | CG44001-RA | 416..796 | 9..389 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5046147..5046341 | 195..389 | 975 | 100 | Plus |
| 2L | 23513712 | 2L | 5045820..5045925 | 89..194 | 530 | 100 | Plus |
| 2L | 23513712 | 2L | 5044608..5044689 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:40:43 has no hits.
UFO08712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:27 Download gff for
UFO08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31919-RE | 144..532 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:01:40 Download gff for
UFO08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44001-RA | 408..796 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:38 Download gff for
UFO08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44001-RA | 408..796 | 1..389 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:38 Download gff for
UFO08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5044600..5044689 | 1..90 | 95 | -> | Plus |
| 2L | 5045822..5045925 | 91..194 | 100 | -> | Plus |
| 2L | 5046147..5046341 | 195..389 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:01:40 Download gff for
UFO08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5044600..5044689 | 1..90 | 95 | -> | Plus |
| arm_2L | 5045822..5045925 | 91..194 | 100 | -> | Plus |
| arm_2L | 5046147..5046341 | 195..389 | 100 | == | Plus |
