UFO08714.5prime Sequence
1109 bp (1010 high quality bases) assembled on 2011-08-05
> UFO08714.5prime
CAGTCGACATGGATGGCGCAAAGGCAGAAGTATTCAGTGTTTCCGTAGAT
ACCAAGATGGGCGCCTTTAAAAATTCCCTGCTGCTGCTGACACTTCTGCT
AGCCATCCATTTGGAGGCATCCAAGATAGTCTACAAGAAGCCGCTCTATG
GCAATAGCAACATCATCAAGGACAAGCGTATAAAGACGAAGCCCGTCAAA
CTGGAAACCAGCACCATGAGCAGCACTGGTGTTGCAAGTAGCAGCACAAC
AGCCGAAGAGGATTGGCCCACGGCCGTTGAGTTTGTGATTATGACAACGC
CCGCAAGCGAATTGGAAGCCAGCACGGAAACCATTGGTAACAATGGCACC
ACCGAAACGACCGTTGGCGAGGCACCCATCATCGGATCGTCGGAAGGATC
CACACGATCGATGGAGCCAACCACCGCGAGTCCGCTGATGAGCACAAACC
CATCGAGCAGCAGCAGTCTGGTTAGCACCATTCCCTTGCCACCGACAGCG
GGACTGCCTGTGCAGGATAATCAGCCAGTGCCGTGCACATGCGGCGTCTT
CCTCTCCTCGCAAATCCCAAATGGCTTGCCGACAAAGCCACTTATCCACC
AGGAATTGGATCATATGTTTCCCTGCAATGCCATCGGTCGCAAGCAGTGT
CAAACCAAATGCCTAGAGACGATCGTACAACATCTGCCGAATTCCGCAAA
TATAGTATGCTCCGCACTGGGTCACGATTGTCACAAGGAACGGGCCTATT
TGTTCATCAAGAACTGTCACAATCAATGGGTTAATACCAATCTGCAGGCG
GGCAGGGAGTACTGTTGTCGCTCTGGCGTTCCCTACCGTTGCCCATTGAT
GGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATATCATAATCATAATCATAATCACACTAGCCTAGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACAATAAAAACGCCCGGCGGCACG
AGCGTTCTGAACAATCAGAATGGAGTTCTGGAGTCATTACTGGATCTATC
ACAGAGTCAGCGAGCTCGATATCAATACGCCCGCCCTGCCACTCACATCG
CAGAATCTG
UFO08714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fcp3C-RA | 963 | CG4015-RA | 81..926 | 9..854 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3173668..3174279 | 671..60 | 3060 | 100 | Minus |
| X | 23542271 | X | 3173413..3173596 | 854..671 | 920 | 100 | Minus |
| X | 23542271 | X | 3174342..3174394 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:41:35 has no hits.
UFO08714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:35 Download gff for
UFO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fcp3C-RA | 1112..1962 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:07:42 Download gff for
UFO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fcp3C-RA | 81..931 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:01 Download gff for
UFO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fcp3C-RA | 81..931 | 9..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:01 Download gff for
UFO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3173408..3173595 | 672..860 | 98 | <- | Minus |
| X | 3173668..3174278 | 61..671 | 100 | <- | Minus |
| X | 3174343..3174394 | 9..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:07:42 Download gff for
UFO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3067441..3067628 | 672..860 | 98 | <- | Minus |
| arm_X | 3067701..3068311 | 61..671 | 100 | <- | Minus |
| arm_X | 3068376..3068427 | 9..60 | 100 | | Minus |
