UFO08715.5prime Sequence
1110 bp (1015 high quality bases) assembled on 2011-08-05
> UFO08715.5prime
CAGTCGACATGTCGCTCAGAAGGGGTGGATTGATGTCCTACAACCAGCGG
CGTATTGCCCGCTGGTACTTTGGAGGTCTGGCGAGCTCCATGGCTGCCAT
GGTGACTCATCCGATTGACTTGATCAAGGTGCTTATCCAAACTCAGGCGG
AGAAGCTATCGGTATTCCAGACCACCCGCAAGATTGTCAAGGAACAGGGA
CCTCTGGCCATGTACAATGGCATCTCGGCCTCAATGCTGCGCCAATACAC
GTACACATTGGCCCGTTTTGGCATTTATTCGGTGGGCTCTGGAGCTATGG
ACACCAGCACCATGGCCGGCAAAACATGTCTAGCCGCGATTGCCGGTGGA
ATTGGCGGGTTTGTGGGCGCTCCTGCAGATCTGATCAACGTCCGCCTGCA
GAACGATGTCAAGTTGCCACCAGAGATTTTTGTGCAACTATAAGCACGCC
ATAGACGGACTGGTGCGAATCACCCGCGAAGAGGGATGGAAAAATCTCTT
CAATGGCTCCTCGATGATCGCGCTCCGTGGAGCTTTTATGACCGTAGGCC
AGATTGCGTTCTACGAGCAAAGCAAGTCCCAAATGATAAAATTGGGAATG
CCCGATTATATGGGCACCTACATCTTAGCATCAATGATCTCCTCCGTGGT
GGCCACCACCTTGACGCAGCCCATCGATGTGGTGAAGACACGTCGCATGA
ATGCAGCACCTGGCGAGTATTCTGGATTGGGGGATGTGTTTGTAAAGACT
TCGAAAGGAGGGACCTCTGGCTTTCTTCAGGGATACGTTCCCTCTTTGAG
TCGATTATTGCCGCACACGGTATTATTATTCTTGGGCCTCGAGTATCTGA
GGACTCACTTTGGATATCTACCAGAGCCAAAACAGACAGTGCATTTTATC
GATATGATGATGTCGATGACGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGTCATATCATATCATATTCATATCATATCACACTA
GGCCTAGGAGATCCTGGTCATGACTAGTGCTGGATCTCACCAATAAAAAC
GCCCTGCCGCAACGGAGCGTCTAAAATCCGATGGGATCTGAAGTCTTACT
GGAATCTACA
UFO08715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic2-RC | 1120 | CG4323-RC | 117..1028 | 9..920 | 4395 | 99 | Plus |
| Dic2-RA | 1599 | CG4323-RA | 596..1507 | 9..920 | 4395 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20500084..20500578 | 920..427 | 2300 | 99 | Minus |
| 3R | 32079331 | 3R | 20500895..20501312 | 426..9 | 2090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:41:40 has no hits.
UFO08715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:36 Download gff for
UFO08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4323-RB | 434..1361 | 1..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:08:13 Download gff for
UFO08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic2-RA | 501..1428 | 1..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:02 Download gff for
UFO08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic2-RA | 590..1517 | 1..929 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:02 Download gff for
UFO08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20500074..20500580 | 425..929 | 97 | <- | Minus |
| 3R | 20500897..20501318 | 1..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:08:13 Download gff for
UFO08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16325796..16326302 | 425..929 | 97 | <- | Minus |
| arm_3R | 16326619..16327040 | 1..424 | 99 | | Minus |
