UFO08716.5prime Sequence
1103 bp (992 high quality bases) assembled on 2011-08-05
> UFO08716.5prime
CAGTCGACATGCAGCTTTTCACACGAGTTATCCTGTTGGCCGTGACCATT
TTCAGCGTCAGTGCCGTGCCGCGTTTTGGAGAAGATATTGGTCTGGAGGA
GGTCCTATTCCGCATGGTCCTTGGTGAGGCTGAGGGTCGAGGTCTGACTC
CTGCTGCCCAGACTTGTGCCAACATCTACCTGAACACCACCCAGAAGAAC
GGCGATAAGTTGGCCAATGCCACCAATGCTTGCGAGGAGGCAGCCAATCG
CACCAATGTCGCCTACACCCAGACCAGCAACTCCACCATCAACCAGATCC
GTCTCCAGTTGTTGACCCTGGAGCAGAACCTGCAGCTGTGCCGCAACGAG
ACCGATTCGGCTATTTTCCTGAACTGCACTGTGTCCACTTTCGACAAGAA
CCTCCAGCTGCTGGACACCTCCAACTCGCAGGCCTACCGTGCTCAGTCCC
AGTTCGTTTCCAATGCCACTCAGATGAATGCCGAGAAATCGAACTGCATC
AGCTCCGCTGTTAGCGAGGCCAAGGTTCAGTCCATCCAGGCGGCCAACGA
CTTTAATTCGTGTCTGGACAAGATCCCAGCCCAGCGTGAGGTGCCACAAA
AGATGGAGCAGCAGCTGAGAGAGCAGCAGCAGGAGAAGCCCACCCAGATA
ACCAAAGAGCAAGTGTCTGCGAAGCCACAGCTGATGTTCGAAGATCTGCC
TTTGACCAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGACCAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCACAGAGTCCAAGCGAGCTCGATATCAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGGCATCTGCCGG
ACATGAAGCCATCACAACCGGCATGATGACTGAATCCGCAGCGGCATCAG
CACTGTCGCCTTGCGTTTATATTTGGCCAATGTGAAACGGGGCCAATTAG
TTG
UFO08716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5084-RB | 1182 | CG5084-RB | 27..730 | 7..710 | 3520 | 100 | Plus |
| CG5084-RA | 773 | CG5084-RA | 27..730 | 7..710 | 3520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18019046..18019378 | 57..389 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 18019439..18019759 | 390..710 | 1605 | 100 | Plus |
| 2R | 25286936 | 2R | 18018691..18018746 | 7..62 | 265 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-26 23:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2387 | 594..662 | 110 | 65.7 | Plus |
UFO08716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:36 Download gff for
UFO08716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5084-RA | 21..739 | 1..724 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:08:42 Download gff for
UFO08716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5084-RA | 22..740 | 1..724 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:03 Download gff for
UFO08716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5084-RA | 22..740 | 1..724 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:03 Download gff for
UFO08716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18018686..18018740 | 1..56 | 92 | -> | Plus |
| 2R | 18019046..18019378 | 57..389 | 100 | -> | Plus |
| 2R | 18019439..18019769 | 390..724 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:08:42 Download gff for
UFO08716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13906191..13906245 | 1..56 | 92 | -> | Plus |
| arm_2R | 13906551..13906883 | 57..389 | 100 | -> | Plus |
| arm_2R | 13906944..13907274 | 390..724 | 98 | == | Plus |
