UFO08717.5prime Sequence
1113 bp (1016 high quality bases) assembled on 2011-08-05
> UFO08717.5prime
CAGTCGACATGAGCAGCGCTTTGAACGCCAAGGAGTTACTTATACGCGCC
GTGGAATGCGACCAAGTTGGACGGATCTTGGAGGCGCAAACGCTGTACAC
AGAGGGGATCGGGCAGTTGATGCAGTTCGTCAACGGGGAACCGGATGAAG
CCAAACGGAAGGGGTTCCTGACCAGGATCAAGGAGTACATGGATCGGGCT
GACGCAATTAAGGCGCGGATCAATGGCAAACTAATGCTCGGCGAGGTGGT
TTCCCACGTTTCCATCGACGAGAATGATACGGGCTTCGACTACGATCAGC
TCTTCGGGAAATACATGGACGACAAGACCGTCGAGATCATGCTGGAGGAA
CCCTACATGACGCAGAACTATCAGTATCAAAATCTAATAAGATTCTTGGA
GCTAGCTGCCACAAATTGCCCAAACCTAATGTATTTTCGACTGATCACCA
AAGAGTACAAGGATGCAAAGAATCCAGATCAGCAGGAAACAAATCTTGGA
CAGATCAAGGGTGACTTGGAGCGGCGGAACGTGACTGTCTACATAAAATA
CGAAGACTCTCTGCACGATCGAAAAATTTACTTAAGCAATGGCTATATAA
TTAAGATTGGGCGAGGTCTGCACTTCTACAAGCCCGCCAATCCGATGTAT
TCCATTGGCCTGGTCAACTACAAATTCCGAAAATGCCTCCAAACGGATGT
GGATATATGGCGCAACTCAAGCGCTGCATCGGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCGACATTGCAGCATCACAACGGCATGAATGAAC
TGAATCGCAGGCGCATCAGCACTTGTTCGCCTTGCTATATATTGCCATGG
GTGGAACCGGGGC
UFO08717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14985-RB | 2808 | CG14985-RB | 126..848 | 9..731 | 3585 | 99.7 | Plus |
| CG14985-RC | 1859 | CG14985-RC | 126..701 | 9..584 | 2850 | 99.7 | Plus |
| CG14985-RC | 1859 | CG14985-RC | 798..948 | 581..731 | 740 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4003599..4003964 | 9..374 | 1830 | 100 | Plus |
| 3L | 28110227 | 3L | 4004133..4004341 | 372..580 | 1030 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4004516..4004666 | 581..731 | 740 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:41:50 has no hits.
UFO08717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:37 Download gff for
UFO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14985-RB | 128..854 | 9..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:09:10 Download gff for
UFO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14985-RB | 126..852 | 9..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:04 Download gff for
UFO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14985-RB | 126..852 | 9..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:04 Download gff for
UFO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4003599..4003964 | 9..374 | 100 | -> | Plus |
| 3L | 4004136..4004341 | 375..580 | 99 | -> | Plus |
| 3L | 4004516..4004665 | 581..730 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:09:10 Download gff for
UFO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4003599..4003964 | 9..374 | 100 | -> | Plus |
| arm_3L | 4004136..4004341 | 375..580 | 99 | -> | Plus |
| arm_3L | 4004516..4004665 | 581..730 | 99 | -> | Plus |
