UFO08719.5prime Sequence
1149 bp (1034 high quality bases) assembled on 2011-08-05
> UFO08719.5prime
CAGTCGACATGAGTGGCGTCCAGACCGCCGAAGCCGAGGCGCAGGCCCAA
AACCAAGCGAATGGCAACAGGACCAGGTCGCGTTCCCACTTGGACAACAC
AATGGCCATCCGACTGCTGCCGTTGCCCGTGCGAGCCCAGCTATGTGCCC
ACTTGGATGCCCTAGACGTATGGCAACAGCTGGCCACGGCCGTAAAACTC
TATCCCGACCAGGTGGAGCAGATAAGCAGCCAGAAGCAGCGTGGCCGCTC
AGCCTCCAATGAGTTCCTCAACATTTGGGGCGGTCAGTACAATCACACGG
TGCAAACATTGTTTGCTTTGTTCAAAAAATTGAAGCTTCATAACGCCATG
CGTCTGATCAAAGATTACGTTAGCGAGGATCTGCACAAGTACATACCGAG
GAGCGTGCCCACCATCAGCGAGCTGCGCGCTGCTCCCGATTCCAGTGCCA
AAGTAAACAACGGCCCGCCGTTTCCCTCCTCCTCGGGCGTCAGCAACTCA
AACAACAATCGCACCAGCACAACGGCAACGGAGGAGATACCCAGCCTGGA
GTCCCTGGGCAATATACACATTAGCACCGTACAGCGGGCAGCCGAATCCT
TGCTGGAGATCGATTATGCGGAGCTAGAAAACGCCACGGACGGCTGGAGT
CCGGATAATCGACTGGGACAGGGCGGATTCGGAGACGTGTACCGCGGCAA
ATGGAAGCAACTGGACGTGGCCATCAAGGTGATGAACTACCGCAGTCCCA
ACATCGACCAGAAAATGGTGGAGCTGCAGCAGAGCTACAACGAACTCAAG
TATTTAAACAGCATCCGGCACGACAATATCCTGGCCCTCTACGGATACAG
CATCAAAGTGGTAAGCCGTGCCTCGTCTACCAGCTGATGAAGGCGGCTCC
CTGGAGCTCGTTTACGAGCGCATAAGCACAAAACCACTACCAGCACTCAC
CTGCAGCAGCGGTTTAGCATCAGCCTCGGCACGGCTAGAGCATCTACTTT
CTGCACACGGGGCGGAGGCACACCGCTGATTCATGAAATATTAAGCCGGC
AACATTCTGCTGGACATGTCTGCAGCCAAAATCGGGACTCGTCTGGTGCG
CGGGTCCCAGTTCTTGGAACTGGTGTGAGTGACATAGGTTCGGCACTAG
UFO08719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pll-RB | 1852 | CG5974-RB | 226..1352 | 9..1118 | 5125 | 98 | Plus |
| pll-RA | 1931 | CG5974-RA | 226..1352 | 9..1118 | 5125 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27251914..27252579 | 988..329 | 3030 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27252638..27252957 | 328..9 | 1600 | 100 | Minus |
| 3R | 32079331 | 3R | 27251754..27251848 | 1081..990 | 220 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:41:59 has no hits.
UFO08719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:38 Download gff for
UFO08719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 216..1350 | 2..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:10:08 Download gff for
UFO08719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 218..1352 | 2..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:08 Download gff for
UFO08719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 218..1352 | 2..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:08 Download gff for
UFO08719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27251914..27252579 | 329..988 | 99 | <- | Minus |
| 3R | 27252638..27252965 | 2..328 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:10:08 Download gff for
UFO08719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23077636..23078301 | 329..988 | 99 | <- | Minus |
| arm_3R | 23078360..23078687 | 2..328 | 98 | | Minus |
