UFO08720.5prime Sequence
1120 bp (999 high quality bases) assembled on 2011-08-05
> UFO08720.5prime
CAGTCGACATGTGCATTTTCATCGATTGCTTATTAAGCCCCTTGATTATG
TGGCCAGCTACTATCGGCGTGGGCATCTACTTCTTGAAGGAGTACATGCA
AGGTGGAAAGTTTACGAAGGACACCGATGAGACCGGAAAGGTATTCATTG
TGACCGGTGCCAACACGGGCATTGGCAAGGAGACGGCTCTGGAGATAGCC
AGACGTGGGGGAACTGTGTACTTGGCTTGCAGGGATATGAACCGATGTGA
AAAGGCCCGCAAGGATATCATCAAGGAGACAAATAACCAGAATATATTCT
CTCGAGAGCTGGACCTAAGTTCCCTGGACTCCATTCGCAAATTTGTTGAT
GGCTTCAAGAAGGAGCAACCCAAGCTTCACGTCCTGATCAACAATGCCGG
CGTGATGCGTTGTCCCAAGACCCTAACCAAGGATGGCTACGAACTGCAGC
TGGGAGTAAATCATATTGGTCACTTTTTGTTGACTAACTTGCTGCTCGAC
GTACTGAAGAACTCGGCTCCCAGTCGCATTGTCGTTGTGTCCAGTCTGGC
ACATGCGCGTGGCTCCATTAACGTAGCCGACCTCAACAGCGAGAAGTCGT
ATGATGAGGGCCTAGCCTACAGCCAGAGCAAGTTGGCCAACGTCCTGTTC
ACCCGGGAATTGGCCAAGCGTTTGGAGGGCAGCGGAGTCACAGTAAATGC
CCTTCACCCTGGTGTGGTGGACACTGAGCTGGCGCGGAACTGGGCCTTCT
TCCAGACAAACCTTGTGAAGTTCTTTTTAAAGCCAATGATTTGGCCGCTT
TTAAAGACACCGAAGAGTGAGCTCAGACCTCGATTTACGCTGCTTTGGAT
CCGGAGCTTAAGAACATCTCTGGCCTGTACTTCAGTGACTGCAAACCAAA
GCCTGTGCTTCTGTGCCTTGACGATACGTTGCCAAGTTCCTGTGGCCGAG
AGCGAGAAGTGACGGCTTAGATAGCTGAGCTAATACGCAGCTTTCTAGAC
ATTCGTTGCGCGCGGGCCCAGGTTATGGTCATAATCATAATTCATATCAT
ATCATAATCACCAACTAGCTTAGGAATCTGGTCATGACTATGCCTTGGAT
TCACAATAAAAGCCGTGCAC
UFO08720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2064-RA | 1210 | CG2064-RA | 110..1097 | 9..985 | 4615 | 98.5 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 183..833 | 93..743 | 1290 | 80.1 | Plus |
| CG2065-RA | 1204 | CG2065-RA | 154..804 | 93..743 | 1290 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7666685..7666948 | 508..771 | 1320 | 100 | Plus |
| 2R | 25286936 | 2R | 7666146..7666409 | 89..352 | 1305 | 99.6 | Plus |
| 2R | 25286936 | 2R | 7666473..7666630 | 352..509 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 7664037..7664287 | 93..343 | 730 | 86.1 | Plus |
| 2R | 25286936 | 2R | 7667004..7667201 | 770..961 | 675 | 96.5 | Plus |
| 2R | 25286936 | 2R | 7665937..7666017 | 9..89 | 390 | 98.8 | Plus |
| 2R | 25286936 | 2R | 7664354..7664509 | 354..509 | 315 | 80.1 | Plus |
| 2R | 25286936 | 2R | 7664680..7664808 | 615..743 | 300 | 82.2 | Plus |
| 2R | 25286936 | 2R | 7656165..7656370 | 519..724 | 280 | 75.7 | Plus |
| 2R | 25286936 | 2R | 7655578..7655668 | 96..186 | 245 | 84.6 | Plus |
| X | 23542271 | X | 6342606..6342754 | 384..532 | 190 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:42:04 has no hits.
UFO08720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:39 Download gff for
UFO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2064-RA | 97..1082 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:10:38 Download gff for
UFO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2064-RA | 102..1087 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:10 Download gff for
UFO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2064-RA | 102..1087 | 1..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:10 Download gff for
UFO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7666474..7666630 | 353..509 | 100 | -> | Plus |
| 2R | 7666687..7666946 | 510..769 | 100 | -> | Plus |
| 2R | 7665929..7666016 | 1..88 | 94 | -> | Plus |
| 2R | 7666146..7666409 | 89..352 | 99 | -> | Plus |
| 2R | 7667004..7667201 | 770..961 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:10:38 Download gff for
UFO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3553434..3553521 | 1..88 | 94 | -> | Plus |
| arm_2R | 3553651..3553914 | 89..352 | 99 | -> | Plus |
| arm_2R | 3553979..3554135 | 353..509 | 100 | -> | Plus |
| arm_2R | 3554192..3554451 | 510..769 | 100 | -> | Plus |
| arm_2R | 3554509..3554706 | 770..961 | 96 | == | Plus |
