UFO08722.5prime Sequence
1147 bp (1024 high quality bases) assembled on 2011-08-05
> UFO08722.5prime
CAGTCGACATGTCGATGATATTCAACACGGAGTATGGCTACCTGGAGGCC
CTAACGCGCGGATTCAAGAACGGCATGCTAAAGCACTCGGACTATCTAAA
TCTGACCCAGTGTGAATCCCTCGAGGACGTAATGATCAGCATCCAGGGCA
CGGATTACGGTCTCATCTTTGGTGGCGAACAATCAGCGCCGTCCGTTGAG
GTGATCGAAAGATGCCTTAGGGATCGTCTGCTGCAGCAATACTACTACAT
ACGCAGTCATTCGACGGAGCCGCTGACCACCTTTATGGAGTTCATACGAT
ATCCGTTCATGATCGATAATGTGGCGCTTCTGGTCGCTGGCCTAAACAAT
CACCGATCCATGAAGCGTCTGCTAAGAATGTGTCATCCGCTGGGCGAATT
CGATCAACTGGGCGCCATCGAAGTGGCCTCGAATTCTGCGGAGCTCTTCG
ACGCCGTTCTAATTGACACGCCCATCGCTCGGTTTGTGCCACGCGATTTG
CCCATGGAGTCGTTGCGTTACCTCGACGTGGAGATTGTGCGTGCCCATCT
GTATCGTGCTTATTTGGAGAAATTCTACGCCTATTGCAGCCAACTGGGCG
GCAATACCGCCAACGTGATGACCAATCTATTGTCCTTCGAGGCGGATCGT
CGGACCATTACAATAGCTGTGAACGCTATTTGGCAGTGATATCATACCGA
AGGAGCGTCTAAAGATGTTCCCCACCCTGTGGCTACCTGCCCAAAATAGC
CTTGGCCTCCATGTCCACTTTAAATGATACGGATAAAATAAGGGATGTTT
GCAATGTGTTCGATGGCTATGGCAAAATGTTTGACAATTTGGAGCGCGAC
TCGGACGGCATGATTACGCTGGAGGACCGCTTTCTCATGATGGAAGGCCA
AGAAGAATGTGCAGACCTTCCTGCAGCAGTACCATTTCGGGATCTCTACT
CGTTCATTAAACTTAACAGTTGGAGGTACGCAATATCGTCTGGATAACGA
ATGCATAGCGCATCGACAGAACGGACAGAATCAACGCCTTTCATTCCCAT
ACCCTTGGACCCAAGCTTTCTAGACCATTCGGTTGGGCCCGCGGGCCAGG
TAAGTGTTCATAACATAATCCATAAATCAAAATCTATAATCACAACT
UFO08722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaAC39-2-RA | 1233 | CG4624-RA | 71..1127 | 2..1060 | 5050 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23158554..23159246 | 695..2 | 3390 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23158123..23158490 | 1060..692 | 1465 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:41:26 has no hits.
UFO08722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:34 Download gff for
UFO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC39-2-RA | 70..1127 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:06:37 Download gff for
UFO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC39-2-RA | 70..1127 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:57 Download gff for
UFO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC39-2-RA | 70..1127 | 1..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:57 Download gff for
UFO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23158123..23158486 | 696..1060 | 97 | <- | Minus |
| 3R | 23158554..23159246 | 1..695 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:06:37 Download gff for
UFO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18983845..18984208 | 696..1060 | 97 | <- | Minus |
| arm_3R | 18984276..18984968 | 1..695 | 99 | | Minus |
