UFO08723.5prime Sequence
1104 bp (1029 high quality bases) assembled on 2011-08-05
> UFO08723.5prime
CAGTCGACATGGGCGATAATGTGATTCCTGCTCCGCTTAGCCGTATCCCG
GGCACCAGCCAGGCGAAGGAGAAGCACAGCAAGGACCTGAAGACCCTCAC
CTATCCGCAGCTGCTGGAGATTAAGGACAGGCAGTCTCACTTTCTGTCGT
TCAAAAAGCGTTTGCACCAACTGCCGGACAAGGGAAAGCGTCTGCAGGAG
TCGTACGACAAATTACTGGCCGAGATCAGGAGGCGGGATGAAGTAGAGGA
AGCGACTCGAATGTTGAGCGGTCTCAACATTGTCGAAAAGGGCAAAATTG
CTCTCAACAATCTGGAGTGGAATGGCAGAAACACGGACGAGGGCGCCCAT
GTGGACGACATTCTGGACAGCGATGATGAGGTGGAGATGGATCCGCTGCG
GATTATAGCGCAGGGAACAATGCACGAGAAGAAGGTCAAGGTTTTGCCTC
CGCCAACGAGTTTCATTACGGCAGATGACCTGGCGGATATCGAGGAGTTT
AAGAAACCAACCGACTCCCCAGATTCCGCTTTGGCAGGACATAGTGACAC
CAGTTCCCTTCCAGCCGAAATCGTAGAAATCGACGCCAGTCAAGTGGCCG
CAAAGCTGAGCAGGGAGCTGCCTCCCGATCAGCATGCCCTCTACCTCATC
GATAAGACGGAAACAAATGTGAATACTCCTAGGGAAAAGTTTATGCCATT
CCGCACCACGAAGTCCAATGTCCACAATCCCGACAAGGAGCGCGTGCGCA
AAAAGGGCAAGCATTGGGAAATAACGGCAGCAACTCCGCCACTCATCCAG
CACAAAGAGGCCCAGTTGGTGCCATTGGCTGAGTCGGCTGCGTTACAGAT
TGATTACATGCAAAGAGTAAAGGAGGTTCGCATTCAGCAGGCTGAACAGC
GGCTGGCCAGGCTTAAAGACTCTCGACTCCGACTTGGCCTGCCCGAGGAT
CGATTGTGAAACAAGGAATCCTTCCGCACTACCGTGATCCCAGACACTTT
TCTCATCGAGCAGCAAAGCCAGCGAAGCGATGAGTGCAGATCACTGTCAA
GACGAGAATCGTCGGCAGTGCATCATACCCGGGTTCGAGCAAGCTTCTAA
ACCA
UFO08723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3773-RA | 1247 | CG3773-RA | 36..1108 | 9..1063 | 4845 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19229711..19230429 | 155..873 | 3505 | 99.2 | Plus |
| 3R | 32079331 | 3R | 19229498..19229643 | 9..154 | 715 | 99.3 | Plus |
| 3R | 32079331 | 3R | 19230483..19230628 | 871..1010 | 500 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:41:30 has no hits.
UFO08723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:34 Download gff for
UFO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3773-RA | 2..1055 | 5..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:07:11 Download gff for
UFO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3773-RA | 2..1055 | 5..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:59 Download gff for
UFO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3773-RA | 28..1085 | 1..1045 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:59 Download gff for
UFO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19229490..19229643 | 1..154 | 96 | -> | Plus |
| 3R | 19229711..19230428 | 155..872 | 99 | -> | Plus |
| 3R | 19230485..19230670 | 873..1045 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:07:11 Download gff for
UFO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15055212..15055365 | 1..154 | 96 | -> | Plus |
| arm_3R | 15055433..15056150 | 155..872 | 99 | -> | Plus |
| arm_3R | 15056207..15056392 | 873..1045 | 91 | | Plus |
