UFO08726.5prime Sequence
1109 bp (988 high quality bases) assembled on 2011-08-05
> UFO08726.5prime
CAGTCGACATGCCGTCGCCAGGACACCACACATCATTCTGCTGCTCCACG
GCAGGATTTATCGCTTGCTCAGCAATCGTTCTGCTTTGCAGTTCCGAGGT
CCTGTCTAGTTGGGAAGAGTGGTGGACATACGATGGCATATCCGGACCAA
GCTTCTGGGGCCTCATCAATCCGCAGTGGAATATGTGCAACAAAGGACGC
CGCCAATCGCCCATCGACGTGGTGCCCGACAAGTTGCTCTTCGATCCATA
TTTGCGGCCCCTGCACATTGACAAGCACAAGGTTTCCGGCACTCTGCACA
ACACGGGCCAGTCGCTGGTCTTCCGCGTGGACAAGGACACCAAGCAGCAC
GTGAACATATCCGGTGGACCGTTGGCCTACCGCTACCAGTTCGAGGAGAT
CTACATACATTATGGCACGGAGAATGTTTGCGGATCCGAGCACTTCATCC
AGGGCTATAGCTTTCCCGGCGAGATCCAAATCTATGGATTCAACAAGGAG
CTGTACCACAACATGTCCGAGGCGCAGCACAAGTCGCAGGGAATCGTTGG
ACTCTCGTTGATGGTGCAAATTGGCGAGACGCCCAATCCGGAGCTACGGA
TCATCACGAGCACCTTCAACAAGGTGTTGTATAGAGGATTCTCCACGCCC
ATCCGACACATATCCGTGAGGTCGCTGCTGCCGAACACGGATCACTACAT
CACCTATGAGGGCTCCACGACGCATCCGGGCTGCTGGGAGAGCACCGTCT
GGATCATAGTTAATAAGCCCATCTATATCACCAAACAGGAGTTGTCCAAC
TCCGACGACTGATGCAAGGCTCCGAGAGTACACCCAAAGCTCCACTAGGT
AATAATGCGCGACCAGTGCAAAGTTTACACCATAGAACCCGTAGAACGAA
CATAGATTTAAGCGAACCAGAATCATTATTGCCGTGCCCCCTCGATGTAC
AAGGATATGTACTAATAAGGGCGAATCGAATGGTCACCGGAACCAGGGAC
TTTTGATACGTGCCAGCTTTTCTAGAACCATCGTTTGGCGCGCCGGGCCC
AAGTAAGTGTCAAAATCTTATCTTAATCATACTCATATCCAAACTAGCCT
AAGGAAATC
UFO08726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1402-RC | 3875 | CG1402-RC | 551..1549 | 9..1011 | 4645 | 98.2 | Plus |
| CG1402-RB | 1881 | CG1402-RB | 551..1549 | 9..1011 | 4645 | 98.2 | Plus |
| CG32698-RD | 1775 | CG32698-RD | 561..742 | 108..289 | 295 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7837041..7837234 | 280..473 | 955 | 99.5 | Plus |
| X | 23542271 | X | 7837323..7837488 | 472..637 | 830 | 100 | Plus |
| X | 23542271 | X | 7838695..7838851 | 635..791 | 785 | 100 | Plus |
| X | 23542271 | X | 7836791..7836930 | 144..283 | 700 | 100 | Plus |
| X | 23542271 | X | 7839723..7839836 | 796..909 | 525 | 97.4 | Plus |
| X | 23542271 | X | 7826747..7826834 | 9..96 | 440 | 100 | Plus |
| X | 23542271 | X | 7835026..7835079 | 92..145 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:42:32 has no hits.
UFO08726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:43 Download gff for
UFO08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1402-RB | 300..1313 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:13:32 Download gff for
UFO08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1402-RB | 544..1557 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:23 Download gff for
UFO08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1402-RB | 544..1557 | 1..1018 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:23 Download gff for
UFO08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7839718..7839849 | 792..920 | 95 | -> | Plus |
| X | 7826740..7826834 | 1..96 | 96 | -> | Plus |
| X | 7835031..7835078 | 97..144 | 100 | -> | Plus |
| X | 7836792..7836928 | 145..281 | 100 | -> | Plus |
| X | 7837043..7837234 | 282..473 | 99 | -> | Plus |
| X | 7837325..7837487 | 474..636 | 100 | -> | Plus |
| X | 7838697..7838851 | 637..791 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:13:32 Download gff for
UFO08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7733751..7733882 | 792..920 | 95 | -> | Plus |
| arm_X | 7720773..7720867 | 1..96 | 96 | -> | Plus |
| arm_X | 7729064..7729111 | 97..144 | 100 | -> | Plus |
| arm_X | 7730825..7730961 | 145..281 | 100 | -> | Plus |
| arm_X | 7731076..7731267 | 282..473 | 99 | -> | Plus |
| arm_X | 7731358..7731520 | 474..636 | 100 | -> | Plus |
| arm_X | 7732730..7732884 | 637..791 | 100 | -> | Plus |
